Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01905 and BPUM_1062
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_01905___appA.1.24716.seq
# -bsequence dna-align/BPUM_1062___appA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01905___appA-BPUM_1062___appA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01905___appA-BPUM_1062___appA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01905___appA
# 2: BPUM_1062___appA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1686
# Identity: 1154/1686 (68.4%)
# Similarity: 1154/1686 (68.4%)
# Gaps: 108/1686 ( 6.4%)
# Score: 3621.0
#
#
#=======================================
BSNT_01905___ 1 ATGAAAAGA---CGGAAAACCGCACTGATGATGCTAAGTGTATTGATG-- 45
|||||.||| .|.|||.|| ||..||.|.|||.|||||.||
BPUM_1062___a 1 ATGAATAGAAATAGAAAATCC------ATATTGATCAGTTTATTGCTGAT 44
BSNT_01905___ 46 GTTCTGGC-CAT-CTTTTTATCAGCCTGCTC----GGGATCAAAATCAAG 89
.|||..|| ||| ||| .|.||.||||| || ||||.||.
BPUM_1062___a 45 CTTCACGCTCATGCTT----GCGGCTTGCTCTAGTGG-----AAATAAAA 85
BSNT_01905___ 90 CAACAGCAGCGC---GAAA--AAATCAGCAGGCAAACC-GCAGCAAGGCG 133
|..|.|.|| .| |||| |||||..|.||.||||| |.| ||.||||
BPUM_1062___a 86 CCTCTGGAG-ACAATGAAAAGAAATCCACCGGTAAACCTGTA-CAGGGCG 133
BSNT_01905___ 134 GGGATTTGGTTGTTGGTTCAATCGGAGAACCCACACTTTTTAACTCTCTG 183
|.|||.|.||..|.|||||.||.|.||||||.||..|.||||||||.||.
BPUM_1062___a 134 GAGATCTTGTCATCGGTTCCATTGCAGAACCAACTTTATTTAACTCGCTT 183
BSNT_01905___ 184 TATTCTACCGATGACGCAAGTACGGATATTGAAAATATGCTGTACAGCTT 233
|||||.||.||||..||.||..|.|||||||||.|.|...|.|||||.||
BPUM_1062___a 184 TATTCAACAGATGTGGCGAGCTCTGATATTGAAGAAAGAATCTACAGTTT 233
BSNT_01905___ 234 TTTA----------ACGAAAACGGATGAA----AAACTAAATGTGAAATT 269
|||| |||.||| |.|||| .|.|||
BPUM_1062___a 234 TTTACTTCAGACTGACGGAAA--GTTGAACCCTCAGCTA----------- 270
BSNT_01905___ 270 GTCACTCGCTGAAAGCATTAAAGAATTAGACGGCGGCCTTGCA-TATGAT 318
||||||||.|||...||||||||||..||.|.||| ...||| |.||||
BPUM_1062___a 271 -TCACTCGCAGAAGATATTAAAGAATCTGATGACGG-GAAGCAGTTTGAT 318
BSNT_01905___ 319 GTGAAAATTAAAAAAGGCGTTAAGTTTCATGACGGAAAAGAACTGACTGC 368
||||..||||||||||||||.|||||||||||.||..|.||||||||.||
BPUM_1062___a 319 GTGACCATTAAAAAAGGCGTAAAGTTTCATGATGGTGAGGAACTGACAGC 368
BSNT_01905___ 369 AGACGACGTCGTATTTACGTACAGTGTCCCTTTAAGCAAAGATTACAAGG 418
.||.||.||.||.|||||.|||||..|.||..|.|..||.||.|||||.|
BPUM_1062___a 369 TGATGATGTTGTGTTTACATACAGCATTCCGATCAATAAGGACTACAACG 418
BSNT_01905___ 419 GAGAACGCGGTTCAACATATGAAATGCTGAAATCCGTAGAAAAAAAAGGC 468
|.||.|||||.|||...|.||||.|..|..|.||.||..||||.|.|||.
BPUM_1062___a 419 GGGAGCGCGGATCAGGCTTTGAAGTATTAGATTCTGTTAAAAAGACAGGA 468
BSNT_01905___ 469 GATTACGAAGTCTTGTTTAAGCTGAAATATAAAGACGGTAATTTCTACAA 518
||||||..|.||...||.|||||.||..|.|||||...|.|||||| |
BPUM_1062___a 469 GATTACTCAATCGAATTCAAGCTCAACAAAAAAGATCCTTATTTCT---A 515
BSNT_01905___ 519 CAATG---CGTTAGACAGC-ACAGCTATTCTGCCGAAACATATTCTCGGT 564
.|||| |..|||..||| ||.|| |||.||||.||.||||||.|.|||
BPUM_1062___a 516 TAATGTCACACTAGGAAGCTACGGC-ATTTTGCCTAAGCATATTTTAGGT 564
BSNT_01905___ 565 AATGTTCCGATTGCT----GATTTAGAAGAAAATGAGTTTAACAGAAAGA 610
.||||.|| || | |||.|.|..||||||||.||||||.||||.|
BPUM_1062___a 565 GATGTGCC---TG-TGAAGGATCTCGGTGAAAATGAATTTAACCGAAAAA 610
BSNT_01905___ 611 AACCAATCGGTTCAGGACCATTTAAGTTTAAGGAATGGAAGCAGGGCCAA 660
|||||||.||||||||.||||||||.|||...||.|||||..|.|||.|.
BPUM_1062___a 611 AACCAATTGGTTCAGGTCCATTTAAATTTGCCGAGTGGAAAGAAGGCGAC 660
BSNT_01905___ 661 TATATTAAGCTCGAAGCGAATGATGATTACTTTGAAGGAAGACCGTATTT 710
||..|.||.||.|||||...|||.|||||.|..||.|||.|.||.||..|
BPUM_1062___a 661 TACGTGAAACTAGAAGCCTTTGACGATTATTGGGATGGACGTCCATACCT 710
BSNT_01905___ 711 AGATACTGTGACGTATAAAGTCATTCCTGACGCAAATGCTGCCGTTGCTC 760
.|||||.||.|||..||||..|||||||||...||||||.||..||||.|
BPUM_1062___a 711 TGATACCGTCACGATTAAAACCATTCCTGATCAAAATGCAGCAATTGCCC 760
BSNT_01905___ 761 AGC-TGCAGGCAGGCGATATTAATTTCTTTAATGTGCCCGCCACTGA-CT 808
||| |.|| |||||.||||||.||||||||..|||.||.|...|.|| ||
BPUM_1062___a 761 AGCTTTCA-GCAGGTGATATTGATTTCTTTGCTGTTCCGGGAGCAGAGCT 809
BSNT_01905___ 809 ACAAAACGGCTGAAAAATTCAACAACCTAAAAATCGTTACTGATTT--GG 856
.| ||||||||||||||.|||.||||.|.|||||.|...|||||.| ||
BPUM_1062___a 810 GC-AAACGGCTGAAAAAATCAGCAACATTAAAATTGAATCTGATCTAGGG 858
BSNT_01905___ 857 CATTAAGTTATGTGTACATCGGGTGGAATGAAAAAAATGAATTATTCAAG 906
| |.|.||||...|||||.||.||||||.|.|||||||||.|.||.||.
BPUM_1062___a 859 C--TCAATTATTCATACATTGGCTGGAATCAGAAAAATGAACTCTTTAAA 906
BSNT_01905___ 907 GATAAAAAGGTTCGTCAAGCGCTGACAACCGCTCTTGACCGCGAGTCAAT 956
..||||||.||.||.||.|||||.|||...||..||||||||.|..|.||
BPUM_1062___a 907 AGTAAAAAAGTGCGCCAGGCGCTCACACATGCCATTGACCGCCAAACGAT 956
BSNT_01905___ 957 CGTCAGCCAAGTATTAGATGGAGACGGCGAGGTAGCTTACATTCCGGAAA 1006
.|||...|||||.||.||||||||||||.|.|||||..|||||||.||.|
BPUM_1062___a 957 TGTCGATCAAGTGTTGGATGGAGACGGCAAAGTAGCCAACATTCCAGAGA 1006
BSNT_01905___ 1007 GCCCTTTATCTTGGAACTATCCTAAAGATATAGA---TGTTCCGAAATTT 1053
|.||..|.||.||||||||||| ||||| || || ||||||...||||
BPUM_1062___a 1007 GTCCACTGTCATGGAACTATCC-AAAGA-AT-GATCGTGTTCCAGTATTT 1053
BSNT_01905___ 1054 GAGT----ACAACGAGAAAAAAGCGAAACAGATGCTTGCAGAAGCCGGCT 1099
|||| .||| .|||||||||||.|||||||...|||||..||||
BPUM_1062___a 1054 GAGTTTGATCAA----GAAAAAGCGAAAAAGATGCTGAAAGAAGAGGGCT 1099
BSNT_01905___ 1100 GGAAAGATACGAACGGTGACGGCATTCTGGATAAAGACGGAAAGAAATTC 1149
||.|.|||||..|.||.||.|||..|||.|||||.||.||.||.||||||
BPUM_1062___a 1100 GGGAGGATACAGATGGGGATGGCTATCTTGATAAGGATGGTAAAAAATTC 1149
BSNT_01905___ 1150 TCGTTTACCCTTAAAACGAACCAAGGAAACAAAGTCCGTGAAGACATCGC 1199
||.|||..|.|.||.||.|||||||||||||||||||||||||||||.||
BPUM_1062___a 1150 TCCTTTGTCATAAAGACCAACCAAGGAAACAAAGTCCGTGAAGACATTGC 1199
BSNT_01905___ 1200 TGTCGTCGTTCAGGAACAGCTGAAAAAAATCGGCATTGAAGTGAAAACCC 1249
||||||.||.|||.|.|||||.||..||||.||..|.||||.|||..|.|
BPUM_1062___a 1200 TGTCGTTGTCCAGCAGCAGCTCAAGGAAATTGGTGTGGAAGCGAAGCCAC 1249
BSNT_01905___ 1250 AGATCGTTGAATGGAGCGCTCTCGTTGAACAAATGAATCCTCCGAATTGG 1299
|.||.||.||||..|||||.||..|||||||.|.||..||.||.||.|||
BPUM_1062___a 1250 AAATTGTGGAATTCAGCGCACTTATTGAACAGACGACACCGCCTAAATGG 1299
BSNT_01905___ 1300 GATTTTGATGCAATGGTCATGAGATGGAGTTTATCCACATTCCCAGATCA 1349
||||.|||||||.|..|..|..|.|||||..|..|.||||||||.||.||
BPUM_1062___a 1300 GATTATGATGCACTACTGCTCGGCTGGAGCCTTGCGACATTCCCTGACCA 1349
BSNT_01905___ 1350 ATATGATATCTTCCATTCAAGCCAGATTA-AAAAGGGTTTGAACTACGTT 1398
|||....||||||||.||||||||| |.| ||||.||.|||||..||.|.
BPUM_1062___a 1350 ATACAGCATCTTCCACTCAAGCCAG-TCAGAAAAAGGCTTGAATAACATC 1398
BSNT_01905___ 1399 TGGTATAAAAATGCCGAAGCGGATAAACTCATGAAAGATGC--AAAATCA 1446
||||||||||||...||.|..|||||.||..|....||||| |.|||
BPUM_1062___a 1399 TGGTATAAAAATAAAGAGGTCGATAAGCTGTTAGTGGATGCCAAGAAT-- 1446
BSNT_01905___ 1447 ATCAGTGATAGAAAGCAGTATTCAAAAGAATATGAGCAAATCTATCAAAA 1496
.|.||||||.||||..|.||||||||.|..|||||..||||.|||.||..
BPUM_1062___a 1447 TTAAGTGATCGAAAAGAATATTCAAAGGCTTATGAAAAAATTTATGAACT 1496
BSNT_01905___ 1497 AATTGCGGAAGATCAGCCCTATACGTTCTTGTATTATCCTAACAACCATA 1546
.|||||.||||||||.||.|||||||||.|.||.|||.|||||...|||.
BPUM_1062___a 1497 GATTGCAGAAGATCAACCATATACGTTCCTTTACTATGCTAACTCACATC 1546
BSNT_01905___ 1547 TGGCAATGCCGGAAAATCTTGAAGGATACAAATATCATCCGAAACGTGAT 1596
..||.|||||....|||||..||||.|||..|||.||.||||||..|||.
BPUM_1062___a 1547 GCGCGATGCCATCTAATCTCCAAGGCTACTCATACCACCCGAAAGATGAG 1596
BSNT_01905___ 1597 TTGTATAATATTGAAAAATGGTGGCTTGAAAAATAA 1632
|..||.||.||.||.|||||||||.|||||.|.||.
BPUM_1062___a 1597 TATTACAAAATCGAGAAATGGTGGATTGAACAGTAG 1632
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