Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01835 and BPUM_1008
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_01835___yisL.1.24716.seq
# -bsequence dna-align/BPUM_1008___yisL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01835___yisL-BPUM_1008___yisL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01835___yisL-BPUM_1008___yisL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01835___yisL
# 2: BPUM_1008___yisL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 248/409 (60.6%)
# Similarity: 248/409 (60.6%)
# Gaps: 92/409 (22.5%)
# Score: 690.0
#
#
#=======================================
BSNT_01835___ 1 ATG---ACACACCTACATATTACGACATGGGTGGTAGCG------CTGAT 41
||| ||.||..||||||||||..||||||||.||| | ||.||
BPUM_1008___y 1 ATGGGAACGCATTTACATATTACAGCATGGGTGCTAG-GAATTATCTTAT 49
BSNT_01835___ 42 TCT-----GCTTTTCGTCAGCTACTCGCTGTATTCGTCAGGAAGTG-CAA 85
||| ||.||| ||| ||.|||| ||.| ||..| |||
BPUM_1008___y 50 TCTTCGTGGCCTTT-----GCT-CTAGCTG-----GTAA--AAACGACAA 86
BSNT_01835___ 86 AGGGCGCAAAAAT----CACTCATATGATTCTGCGGTTATTCTATATCCT 131
| ||.||.||||| ||| ||||||.|..|.|||||.|| ||
BPUM_1008___y 87 A-GGTGCTAAAATTGTGCAC----ATGATTGTCAGATTATTGTA----CT 127
BSNT_01835___ 132 T----ATTATTTTGACAGGAGCTGAGCTGTTTGTCCGTTTCGCCAACTGG 177
| |||||....|||||.|..|||||||.|| ||||| ||.||
BPUM_1008___y 128 TAATCATTATCGCCACAGGCGTAGAGCTGTATG-----TTCGC--ACAGG 170
BSNT_01835___ 178 AACGGAGAATAC-----------GC--------CGGCAAAATGATTCTGG 208
||.|.|||.|.| || |||.|||||||||||.|
BPUM_1008___y 171 AATGAAGATTCCAGGTTTCGGTGGCGAGTATATCGGTAAAATGATTCTCG 220
BSNT_01835___ 209 GCATTATCACC-----ATCGGCCTGATGGAAATGCTCCTCATCCGCAAGA 253
|.|| || ||||||.|.|||||||||...||..|.|||||||
BPUM_1008___y 221 GTAT-----CCTAGTGATCGGCTTCATGGAAATGACACTTGTACGCAAGA 265
BSNT_01835___ 254 AAAAAGAAAAATCAACAGGAGGCCTGTG----GATCGGCTTCGTCATTGT 299
||||||.|||||| ||.|.|..||| |||.||.||..||||..|
BPUM_1008___y 266 AAAAAGGAAAATC----GGTGACTGGTGTATTGATTGGTTTTATCATATT 311
BSNT_01835___ 300 C-CTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAA 348
| |..||| ||||..|.||.||||||.|.|.|.||||.||||||||.||.
BPUM_1008___y 312 CGCGATTG-TGACCATTCTTCTCGGTTTACGTCTGCCGATTGGTTTCCAT 360
BSNT_01835___ 349 TTGTTTTAA 357
.|.||||||
BPUM_1008___y 361 ATCTTTTAA 369
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