Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01601 and BPUM_0884
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01601___glpD.1.24716.seq
# -bsequence dna-align/BPUM_0884___glpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01601___glpD-BPUM_0884___glpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01601___glpD-BPUM_0884___glpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01601___glpD
# 2: BPUM_0884___glpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1719
# Identity: 1264/1719 (73.5%)
# Similarity: 1264/1719 (73.5%)
# Gaps: 108/1719 ( 6.3%)
# Score: 4450.5
#
#
#=======================================
BSNT_01601___ 1 ATGA-TGAAACATCAATTTTCAAGTCTT-GAAAGAGATCGCATGCTGACA 48
|||| | |||||.|| ||| ||||||||.|..|||||| ||
BPUM_0884___g 1 ATGACT----------TTTTCTAG-CTTAGAAAGAGAACAAATGCTG-CA 38
BSNT_01601___ 49 -GACATGACGAAAAAAACATATGACCTATTTATTATCGGAGGAGGAATTA 97
||.|||||.||||||.|||||||..|.|||||.||.||.||.||.||||
BPUM_0884___g 39 GGAAATGACAAAAAAACCATATGATGTGTTTATCATTGGTGGGGGTATTA 88
BSNT_01601___ 98 CAGGAGCCGGAACAGCTCTTGACGCGGCATCAAGGGGAATGAAGGTCGCA 147
||||.||.||.|||||.|||||.|||||.|||.|.||||||...||||..
BPUM_0884___g 89 CAGGCGCGGGTACAGCACTTGATGCGGCTTCACGAGGAATGCGCGTCGGT 138
BSNT_01601___ 148 CTAAGC-GAAATGCAGGACTTTGCGGCGGGAACATCAAGCCGATCAACGA 196
|| .|| |||||||||||.||.||.||.||.|||||.|||||.|||||||
BPUM_0884___g 139 CT-TGCAGAAATGCAGGATTTCGCAGCAGGTACATCTAGCCGCTCAACGA 187
BSNT_01601___ 197 AGCTGGTACATGGCGG-CTTGCGCTATTTAAAACAATTTGAAGTGAAAAT 245
|.||.||.||.||.|| ||| ||.||||||||||||||||||||.|||||
BPUM_0884___g 188 AACTAGTGCACGGTGGACTT-CGTTATTTAAAACAATTTGAAGTAAAAAT 236
BSNT_01601___ 246 GGTCGCTGAGGTAGGAAAAGAGCGGGCGATTGTGTATGAAAACGGCCCGC 295
||||||.|||||.||.||||||||.||.|||||.|||||||||||.||.|
BPUM_0884___g 237 GGTCGCAGAGGTCGGTAAAGAGCGTGCCATTGTATATGAAAACGGTCCTC 286
BSNT_01601___ 296 ATGTCACTACACCGGAATGGATGCTGCTTCCATTTCATAAAGGCGGCACA 345
||||.||.|||||.|||||||||||.|||||..|.|||||||||||||||
BPUM_0884___g 287 ATGTGACCACACCAGAATGGATGCTTCTTCCGATGCATAAAGGCGGCACA 336
BSNT_01601___ 346 TTTGGTTCATTTACAACATCTATCGGGTTAAGGGTTTATGACTTCCTTGC 395
||.|||..||||.|||||||.||||||.|.||.||.||||||||..|.||
BPUM_0884___g 337 TTCGGTAAATTTTCAACATCCATCGGGCTGAGAGTGTATGACTTTTTAGC 386
BSNT_01601___ 396 AGGTGTGAA--AAAGTCAGAACGAAGAAGCATGCTTTCAGCAAAAGAAAC 443
.|||||.|| |.|.| |||||.|||||||||||....|||||.|||||
BPUM_0884___g 387 TGGTGTTAAGCATAAT--GAACGCAGAAGCATGCTAAGTGCAAAGGAAAC 434
BSNT_01601___ 444 GC-TGCAAAAAGAGCCTTTGGTAAAAAAAGACGGCTTAGAAGGCGGCGGG 492
.| ||| ||||||.||..|.||.|||||||||||||||.||||||||||.
BPUM_0884___g 435 ACTTGC-AAAAGAACCGCTTGTGAAAAAAGACGGCTTAAAAGGCGGCGGC 483
BSNT_01601___ 493 TACTATGTGGAATACCGCACTGACGATGCGAGACTGACCATCGAAGTCAT 542
||.|||||.||||||||.||.||||||||..|.||.||.||||||||.||
BPUM_0884___g 484 TATTATGTTGAATACCGTACGGACGATGCACGCCTCACAATCGAAGTGAT 533
BSNT_01601___ 543 GAAGGAAGCGGTGAAATTCGGGGCAGAGCCTGTGAATTACTCCAAAGTGA 592
|||.||.||.|||||||||||.|||||..|.||.||.||..|.|||||.|
BPUM_0884___g 534 GAAAGAGGCTGTGAAATTCGGAGCAGAAGCGGTCAACTATGCGAAAGTAA 583
BSNT_01601___ 593 AGGAGCTTCTTTACGAAAAAGGCAAAGCCGTCGGCGTATTAATTGAAGAT 642
|.||..||.||||.||.||||||||||..|||||.||..|.||.||||||
BPUM_0884___g 584 AAGAATTTATTTATGATAAAGGCAAAGTGGTCGGTGTTGTCATCGAAGAT 633
BSNT_01601___ 643 GTGCTGACAAAGAAAGAATATAAAGTGTATGCGAAAAAAATTGTCAATGC 692
||..||||..|||||...|||.|.||.||||||||.||||||||||||||
BPUM_0884___g 634 GTCATGACGCAGAAAACCTATGATGTATATGCGAAGAAAATTGTCAATGC 683
BSNT_01601___ 693 TACAGGCCCTTGGGTCGATCAGCTCAGAGAAAAAGACCATTCGAAAAACG 742
.|||||.||.||||||||||||||.|||||.||.||.||.||.|||.|.|
BPUM_0884___g 684 GACAGGTCCATGGGTCGATCAGCTAAGAGACAAGGATCACTCAAAAGAAG 733
BSNT_01601___ 743 GAAAGCATTTGCAGCATACAAAAGGCATTCACCTTGTATTTGACCAGTCT 792
|.|||||.||.||||||||||||||.||||||.|.|||||.|||||.||.
BPUM_0884___g 734 GGAAGCACTTACAGCATACAAAAGGGATTCACTTAGTATTCGACCAATCA 783
BSNT_01601___ 793 GTCTTTCCGCTGAAACAGGCTGTATATTTCGATACACCTGATGGCCGGAT 842
|||||.|||.|.|||||.||..|.||.||.||.|||||||||...|||||
BPUM_0884___g 784 GTCTTCCCGTTAAAACAAGCGATCTACTTTGACACACCTGATAAACGGAT 833
BSNT_01601___ 843 GGTATTTGCGATTCCTCGTGAAGGCAAAACATACGTGGGAACAACAGACA 892
|||.|||||||||||..|.|||||.|||||.|||||.||.|||||.||.|
BPUM_0884___g 834 GGTCTTTGCGATTCCAAGAGAAGGTAAAACGTACGTTGGTACAACCGATA 883
BSNT_01601___ 893 CTGTTTACAAAGAGGCGCTGGAGCATCCGCGGATGACAACGGAGGATCGT 942
|.||.||||||.|...||||||.||||||||.|||||||..|..||||||
BPUM_0884___g 884 CAGTGTACAAAAAACAGCTGGAACATCCGCGTATGACAAAAGCAGATCGT 933
BSNT_01601___ 943 GATTATGTCATCA-----ATTCAATCAATTATATGTTCCCGGAACTGAAT 987
||.|||||.|||| |||||| ||.||||||||.||.||.|||
BPUM_0884___g 934 GACTATGTGATCAAAGCGATTCAA-----TACATGTTCCCTGATCTCAAT 978
BSNT_01601___ 988 ATCACTGCGAATGACATCGAATCCAGCTGGGCAGGGCTGCGTCCGCTGAT 1037
||.||.|..||.||..|.|||||.|.||||||.||.||.|||||.||.||
BPUM_0884___g 979 ATTACAGAAAACGATGTTGAATCTAACTGGGCTGGTCTTCGTCCACTCAT 1028
BSNT_01601___ 1038 TCATGAAGAAGGCAAAGATCCTTCTGAAATTTCACGGAAAGACGAGATTT 1087
|||||||||.||||||||.|||||.||||||||.||.||.||.||..|.|
BPUM_0884___g 1029 TCATGAAGAGGGCAAAGACCCTTCAGAAATTTCTCGTAAGGATGAAGTAT 1078
BSNT_01601___ 1088 GGACATCTGACTCAGGCTTGATCACCATTGCCGGCGGAAAACTGACTGGA 1137
|||||||....||||||||.|||||||||||.|||||.|||.|.||.||.
BPUM_0884___g 1079 GGACATCATCTTCAGGCTTAATCACCATTGCTGGCGGTAAATTAACAGGC 1128
BSNT_01601___ 1138 TACAGAAAAATGGCGGAGCACATCGTTGATCTTGTACGTGACCGCTTAAA 1187
|||.|.||||||||.||||||||.||..|||||||||||||..|..|.||
BPUM_0884___g 1129 TACCGCAAAATGGCTGAGCACATTGTAAATCTTGTACGTGATGGACTGAA 1178
BSNT_01601___ 1188 AGAAGA---AGGCGCAAAGGATTTTGGCCCGTGTAAAACGAAAAACATGC 1234
|||||| |||| ||.||.|||||.||.||||||||.||..|.||||
BPUM_0884___g 1179 AGAAGAAACAGGC---AAAGACTTTGGACCATGTAAAACAAAGCATATGC 1225
BSNT_01601___ 1235 CAATCTCAGGCGGGCACGTCGGAGGTTCGAAAAATCTCATG---TCCTTC 1281
||||.||||||||.|||||.||.||.||.|||||| ||| .||||.
BPUM_0884___g 1226 CAATTTCAGGCGGTCACGTAGGCGGATCTAAAAAT---ATGGCTGCCTTT 1272
BSNT_01601___ 1282 GTTACC--GCGAAAACAAAAGAAGGAATTGCAGC---CGGTTTATCAGAA 1326
|| || |||||||||..||||||| ||||| .|||.||.|||||
BPUM_0884___g 1273 GT--CCAAGCGAAAACATCAGAAGGA---GCAGCTGTTGGTCTAACAGAA 1317
BSNT_01601___ 1327 --AAAGACGCAAAACAGCTGG-CGATCAGATACGGCTCTAACGT----AG 1369
||...|.|||| |.|||| ||| .|.|||.|||||.||||| ||
BPUM_0884___g 1318 CCAATTGCTCAAA--AACTGGCCGA-AAAATATGGCTCAAACGTTAGCAG 1364
BSNT_01601___ 1370 ATCGCGTCTTTGACCGGATAGAAGCGCTGAAAGATGAGGCCGCGAAACGC 1419
|| ||||..|.||..||||...|||..|||.|||.||.|..|||||.
BPUM_0884___g 1365 -TC---TCTTCAAGCGTGTAGATCAGCTTCAAGGTGAAGCAGACAAACGA 1410
BSNT_01601___ 1420 AACATTCCGGTTCATATTCTTGCTGAGGCAGA--------ATACAGTATA 1461
||.|||||.|...||.|.|| |||||| ||.|| ||.
BPUM_0884___g 1411 AAGATTCCAGCGTATGTACT------GGCAGAGCTTGTCTATGCA--ATT 1452
BSNT_01601___ 1462 GAAGAAGAGATGA-CTGCAACCCCTGCTGACTTCTTTGTCCGCAGAACGG 1510
|||||||| ||.| |||..||.||||..||.|||||..|..|.|||||.|
BPUM_0884___g 1453 GAAGAAGA-ATTAGCTGTTACTCCTGTCGATTTCTTCTTAAGAAGAACAG 1501
BSNT_01601___ 1511 GACGTTTATTTTTTGATATCAATTGGGTAAGAACATATAAAGATGCC-GT 1559
||.|..||.|.|||.|||||||.||||.||.||.||||..|.| ||| ||
BPUM_0884___g 1502 GAAGCCTACTATTTAATATCAACTGGGCAAAAAAATATGCACA-GCCTGT 1550
BSNT_01601___ 1560 TATTGATTTTATGAACGAGCGATTCCAATGGGATG-AGCAGGCAAAAAAC 1608
..||||||.||||...|||||.||....||||||| |||||.| ||||
BPUM_0884___g 1551 CGTTGATTATATGGCAGAGCGTTTTGGCTGGGATGAAGCAGTC---AAAC 1597
BSNT_01601___ 1609 AAA-----CATACAGAA-AACCTCAACAAGCTTTTACACGATGCGGTCGT 1652
|.| ||.|||||| .|..|||| ||.||.||.||.||.||.||
BPUM_0884___g 1598 AGAAGCTTCAAACAGAATTAGATCAA----CTATTCCATGAAGCAGTTGT 1643
BSNT_01601___ 1653 ACCGCTTGA-GC--AATAA 1668
||||||||| || |||||
BPUM_0884___g 1644 ACCGCTTGATGCTGAATAA 1662
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