Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01393 and BPUM_0754
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01393___yfiR.1.24716.seq
# -bsequence dna-align/BPUM_0754.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01393___yfiR-BPUM_0754.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01393___yfiR-BPUM_0754.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01393___yfiR
# 2: BPUM_0754
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 761
# Identity: 356/761 (46.8%)
# Similarity: 356/761 (46.8%)
# Gaps: 319/761 (41.9%)
# Score: 606.5
#
#
#=======================================
BSNT_01393___ 1 TTGTCACCAAAAGTAACA--AAGGAGCA-CAAGGATAAACG--------- 38
.|.| .||||||||.| ||.|| | ||| |||||
BPUM_0754 1 --ATGA-AAAAAGTAAAATTAATGA--ATCAA----AAACGTGTGCTTGA 41
BSNT_01393___ 39 ----GCAGACAA----AGATTTTAGAGGCTGCCAAAACGGTTT---TTAA 77
||.| ||| | .|||||| ||||.||||| |||.
BPUM_0754 42 AGTAGCTG-CAACTTTA-TTTTTAG--------AAAAAGGTTTTGCTTAT 81
BSNT_01393___ 78 ACGTA--AAGGATTCGAATTAACGACGATGAAGGACGTTGTA---GAAGA 122
|| || |.|||| ||||| ||.||| |||| .|||.
BPUM_0754 82 AC-TAGCATGGAT--GAATT-----------AGTACG-TGTAAGCAAAGT 116
BSNT_01393___ 123 GTC-AGGTTTCAGCCGGGGCGGTGTCTATCTTTATTTTTCAAGCACTGAG 171
||| |.||.|.| |||.|||..|.|.|||||.|.||..|||
BPUM_0754 117 GTCAAAGTCTAA----------TGTGTATTATCACTTTTCTAACAAGGAG 156
BSNT_01393___ 172 GAGATGTTTCGCCGCATTATT-GAAACAGGGCTGGATGA----AGGACTC 216
|| |||||| || ||||.|.|.||| .|||.|
BPUM_0754 157 GA-------------ATTATTAGA---AGGGGTTGTTGATTATTGGATT- 189
BSNT_01393___ 217 CGAAAGCTTG-ATAAATCAGC------TGA---AC---------ACCAA- 246
|| |.|| ||.||||.|| ||| || |||||
BPUM_0754 190 -GA---CATGTATCAATCTGCCATTGATGACGTACTATCTCAGAACCAAT 235
BSNT_01393___ 247 ----AGT--------GTTTGGTCCGCCA------TTTCAATCTATT---- 274
||| ||.| ||| |||.||.|.|||
BPUM_0754 236 TCTTAGTTGAAGAACGTAT------CCAACTATTTTTAAAGCAATTATCA 279
BSNT_01393___ 275 --TGGA--TGAACTGTCTGAGGGCCTGCGTGATGTAGCAGATACGCTGGC 320
.||| |.|| || |||.|.|| |||.| ||.
BPUM_0754 280 CAAGGAGTTCAA---TC-GAGAGACT--------------ATAAG--GGG 309
BSNT_01393___ 321 GCCGGTGCAATT-TGAATATT--TAGTGACAG--CTTGGCGGAATGAGGA 365
..|.||.||.|| |.|.|.|| ||.|.|.|| ||
BPUM_0754 310 AGCTGTCCATTTATTACTCTTTATATTCAAAGTCCT-------------- 345
BSNT_01393___ 366 ACGTAGGC------AGTATTTGGAGAAA-AGGTATGATCTTTTTGTGGAA 408
||..|||| |.||...|.|.||| ||||.||.||||| |.
BPUM_0754 346 ACACAGGCCACACAAATAAAAGAAAAAATAGGTCTGTTCTTT------AC 389
BSNT_01393___ 409 AGATTTTCAAA----------TCTAT---TGCAAAAAGGGATCGATCAG- 444
||..||.|||| ||||| ||.||.|||||.|.|| |||
BPUM_0754 390 AGGATTACAAAAGAAGATTACTCTATTACTGAAACAAGGGGTAGA-CAGT 438
BSNT_01393___ 445 GGAGAGTTTC---AGCCGCTTCA-------------GCCTCTTGCGACTA 478
|||||.||.| ||.||.|||| ||.|| |||
BPUM_0754 439 GGAGAATTCCGAAAGACGATTCATATTGATGAGGTGGCATC-----ACT- 482
BSNT_01393___ 479 TCGCCAAGTTT-TTCCTCAATATGAATGACG--GCATCATTCAAAACGCC 525
|||| ||.| ||||.| |||.| ||||.|||
BPUM_0754 483 -------GTTTATTAC-CAATCT---TGAAGGTGCATTATT--------- 512
BSNT_01393___ 526 CTGTATTTCGATGAAGAAA-----AAGCTGATGTATCTGGACTTGCTGAG 570
|||||| ||||| ||| |||| || || ||
BPUM_0754 513 ---TATTTC-----AGAAACATTGAAG--GATG---CT--AC------AG 541
BSNT_01393___ 571 TC--TGC-AAAAC---------TATATTTAAAAACAGTT-CTGCAAGCGG 607
|| |.| ||||| |||.|||| |.|| ||.| |
BPUM_0754 542 TCATTACGAAAACAGCCGATCATATGTTTA-----ACTTGCTTC-----G 581
BSNT_01393___ 608 ATGAGAAGTAA 618
||.|
BPUM_0754 582 ATAA------- 585
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