Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05006 and BPUM_0385
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_05006.1.24716.seq
# -bsequence dna-align/BPUM_0385___acpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05006-BPUM_0385___acpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05006-BPUM_0385___acpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05006
# 2: BPUM_0385___acpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 643
# Identity: 358/643 (55.7%)
# Similarity: 358/643 (55.7%)
# Gaps: 179/643 (27.8%)
# Score: 1272.5
#
#
#=======================================
BSNT_05006 0 -------------------------------------------------- 0
BPUM_0385___a 1 ATGGCAAAAGTTTTATACATCACTGCACATCCGCATGATGAAACAGTTTC 50
BSNT_05006 0 -------------------------------------------------- 0
BPUM_0385___a 51 TTACAGTATGGCTACTGCTAAAGCATTTATCGAATCTTATAAGGAAGCAA 100
BSNT_05006 0 -------------------------------------------------- 0
BPUM_0385___a 101 ACCCAAGTGACGAGGTTGTACATATCGATTTGTACAAAGAAAACATCCCT 150
BSNT_05006 1 -------------ATGTATT---TAGCGTGGGGAAAGCTTCAGTCAGGTA 34
||||||| |.|| |||||.||.||.||.||||||.
BPUM_0385___a 151 CACATTGATGCAGATGTATTCGCTGGC-TGGGGCAAACTACAATCAGGTG 199
BSNT_05006 35 CAGGCTTTGA-AGAGCTTT---CTGAA-AGCGAAAAAGCGAAAGTAGGCC 79
|.|||||.|| |.| |||| ||||| ||| ||||||||||.|..|
BPUM_0385___a 200 CTGGCTTCGATACA-CTTTCAGCTGAAGAGC----AAGCGAAAGTTGCTC 244
BSNT_05006 80 GTTTGGGAGAGCTTAGCGATCAATTTGCATCAGCTGATAAGTACGTATTT 129
||.|....||..|.|||||||||||.|..||.|||||.||.||.||||||
BPUM_0385___a 245 GTCTAAACGAATTAAGCGATCAATTCGTTTCTGCTGACAAATATGTATTT 294
BSNT_05006 130 GTTACTCCTTTATGGAACTTCTCATTCCCGCCAGTGATGAAAGCGTATCT 179
|||.|.||..|.|||||||||||||||||.|||||..|.|||||.||..|
BPUM_0385___a 295 GTTTCACCACTTTGGAACTTCTCATTCCCACCAGTTCTTAAAGCATACAT 344
BSNT_05006 180 CGATTCTGTTGCTGTTGCAGGAAAATCATTCAAATACACAGAACAAGGCC 229
|||.|||||||||||.||.||.|||.|||||||||||||.||||||||.|
BPUM_0385___a 345 CGACTCTGTTGCTGTAGCTGGTAAAACATTCAAATACACTGAACAAGGTC 394
BSNT_05006 230 CTATTGGCTTGTTGACTGATAAAAAAGCAATTCATATCCAAGCGCGCGGC 279
||.||||.||.||.||.||.||||||||..||||.||||||||.||.|||
BPUM_0385___a 395 CTGTTGGATTATTAACAGACAAAAAAGCTCTTCACATCCAAGCACGTGGC 444
BSNT_05006 280 GGCTACTATTCAGAAGGCCCTGCGGCTGAGATGGAAATGGGGCACCGCTA 329
||.|||||..|.|||||.|||||.|||||..|.|||...||.|||||.||
BPUM_0385___a 445 GGATACTACACTGAAGGTCCTGCTGCTGAACTTGAAGCAGGTCACCGTTA 494
BSNT_05006 330 CATCGGCATCAT-GATGAACTTCTTCGGCGTACCATCATTCGAAGGCATT 378
|.|.||.|..|| |.| |.|||||||||..|.||.||.||||||||..||
BPUM_0385___a 495 CCTTGGTACAATCGCT-AGCTTCTTCGGAATTCCTTCTTTCGAAGGTCTT 543
BSNT_05006 379 TTCGTAGAGGGACATAATGCGGAGCCTGATAAAGCACAGCAAATCAAAGA 428
.||||.||.||.||.|||||.|||||||..||||||.|||||||.||||.
BPUM_0385___a 544 ATCGTTGAAGGTCACAATGCTGAGCCTGCGAAAGCAGAGCAAATTAAAGC 593
BSNT_05006 429 AGACGCGATTGCGCGTGCGAAAGAAGCAGGAAAAACATTCTAA 471
|||.||.||.|..||||||||||....|||||||||.||||||
BPUM_0385___a 594 AGATGCAATCGAACGTGCGAAAGCTTTAGGAAAAACTTTCTAA 636
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