Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00567 and BPUM_0299
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:22
# Commandline: needle
# -asequence dna-align/BSNT_00567___ycgL.1.24716.seq
# -bsequence dna-align/BPUM_0299___ycgL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00567___ycgL-BPUM_0299___ycgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00567___ycgL-BPUM_0299___ycgL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00567___ycgL
# 2: BPUM_0299___ycgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity: 531/924 (57.5%)
# Similarity: 531/924 (57.5%)
# Gaps: 216/924 (23.4%)
# Score: 1492.0
#
#
#=======================================
BSNT_00567___ 1 GTGAAAAGCCGCCGCATATCATCAGGCGGTTTTTTTCTGCAAACTGCCGG 50
BPUM_0299___y 0 -------------------------------------------------- 0
BSNT_00567___ 51 AATGAGAACAGACTGGAGACGAAT------AGATATGAAACAAAGAATCA 94
.||||| |||| |||| |||..|||| |||||
BPUM_0299___y 1 -TTGAGA--------GAGA-GAATTAAGGAAGAGCTGAA------AATCA 34
BSNT_00567___ 95 TTGATGAATTAAAACGGATCGAGCAGTCATATGGAGTCAAAATCGTGT-A 143
|.||.| ||||| ||||..|||||.|| .||| .
BPUM_0299___y 35 TCGAAG-----AAACG-------------TATGACGTCAAGAT-TTGTCT 65
BSNT_00567___ 144 TGCCGTCGAGTCAGGAAGCCGCGCATGGGGATTTCCGTCGCAGGATAGTG 193
|||||||||.|||||.||..|.||||||||||||||.|||...|||||||
BPUM_0299___y 66 TGCCGTCGAATCAGGCAGTAGGGCATGGGGATTTCCCTCGACCGATAGTG 115
BSNT_00567___ 194 ATTACGACGTCCGCTTTATTTATGTGCC---GAAAAAGGAGTGGTATTTT 240
||||.||.||.||.|||.|.|||||.|| |||| ||.|||||||..
BPUM_0299___y 116 ATTATGATGTTCGTTTTTTATATGTTCCCCGGAAA---GAATGGTATTGG 162
BSNT_00567___ 241 TCAATTGAGCAGGAGCGTGATGTCATTGAGGAACCGATTCACGATTTGCT 290
.|.||.||..||.|.||||||||||||||...|||||||.|.||..||||
BPUM_0299___y 163 GCGATGGAAGAGCATCGTGATGTCATTGAACGACCGATTGATGACGTGCT 212
BSNT_00567___ 291 GGATATCAGCGGCTGGGAGCTGAGAAAAACGCTTAGGCTTTTCAAAAAGT 340
.||||||||||||||||||||||||||..|||||.|..|.|||||.||.|
BPUM_0299___y 213 TGATATCAGCGGCTGGGAGCTGAGAAAGGCGCTTCGTTTATTCAATAAAT 262
BSNT_00567___ 341 CAAA-CCCTCCGCTCCTCGAATGGCTGTCCTCAGACATTGTGTATTACGA 389
|||| ||.||| .|..|.|||||||||||.||.||.||..|.|||...||
BPUM_0299___y 263 CAAATCCATCC-ATTATGGAATGGCTGTCTTCTGATATCATCTATGCTGA 311
BSNT_00567___ 390 AGCATTTACGACCGCAGAGCAGTTAAGAAAACTGCGCACGGA---GGCAT 436
|.|.||..|....|||.||.||.|||||.||.| .|.||| .||.|
BPUM_0299___y 312 ATCTTTCTCTTTGGCAAAGAAGCTAAGAGAATT---AAAGGATCGAGCGT 358
BSNT_00567___ 437 TTAAGCCTGAAGCAAGCG-------TGTATCACTATATCAATATGGCGAG 479
||.|.||| ||| |||||||.||..|||||||||||||
BPUM_0299___y 359 TTTACCCT-------GCGGCTTTGATGTATCATTACCTCAATATGGCGAG 401
BSNT_00567___ 480 AAGGAACGTCAAAG-----ATTATCTACAAGGACAAGAGGTCAAAATTAA 524
..|||| |.|.|| ||| |||.||||.|..||||...|||.||
BPUM_0299___y 402 GCGGAA--TGAGAGCCGGCATT---TACGAGGAGAGCAGGTGCGAATCAA 446
BSNT_00567___ 525 AAAGTACTTCTACGTTCTTCGGCCTATTTTGGCCTGCCAATGGATTGAAA 574
.|||||.|||||.||.|||||.||..||.|.||||||.|.|||||||||.
BPUM_0299___y 447 GAAGTATTTCTATGTGCTTCGTCCGCTTCTTGCCTGCGAGTGGATTGAAC 496
BSNT_00567___ 575 AGCACGGAACCATACCGCCAATGGACTTTACTGTTTTGATGAATGAACTT 624
...||.||||..|.||.||||||||||||..||..|||.|.||.||.||.
BPUM_0299___y 497 GTTACCGAACAGTTCCACCAATGGACTTTCATGAATTGCTCAAGGATCTA 546
BSNT_00567___ 625 GTTCGTGAA--CCCGAGCTGAAGGCTGAAATGGA--AACCTTGCTTGAAC 670
||....||| ||||...|.|| |.|||||..| ||| ||||..|||
BPUM_0299___y 547 GTGGAGGAAGGCCCGCTTTTAA--CAGAAATTCACGAAC--TGCTCAAAC 592
BSNT_00567___ 671 GGAAAA--GAAGAGGGGAAGAGCTTGACCTCGAAGCAAGAATCG------ 712
|.|||| || .||.|||||..|.||..|.| ||||.||
BPUM_0299___y 593 GTAAAATGGA--CGGAGAAGAAATGGATGTAG-----AGAACCGTCTCGC 635
BSNT_00567___ 713 --ATGTAATTCACCAATTCATTGAAACGGAAATCG--AAAGAA------- 751
|||| |.||.|||| .|||| ||||||
BPUM_0299___y 636 TCATGT-------CCATCCATT--------TATCGACAAAGAACTAGTGC 670
BSNT_00567___ 752 ----TCATGGAAGCGG-CAAAAGAACTGAAGGCAG-AGAAAAAAGATATG 795
|.|| |||..|| .||||| ||..|..||| .||||.|..||.||
BPUM_0299___y 671 GTTTTGAT-GAATTGGTGAAAAG--CTACAATCAGCCGAAAGACAATCTG 717
BSNT_00567___ 796 A--CATCTGAATTGAACCGTTTGCTTTTGAA---TACGGTTGAAGAAGTG 840
| || .|||||.|| |..|||||||.| |||..||||.||.|||
BPUM_0299___y 718 ATGCA--AGAATTAAA---TGAGCTTTTGCAGTCTACCCTTGATGAGGTG 762
BSNT_00567___ 841 TGGA---AGGATGGAGGAAGCTGA 861
|||| ||
BPUM_0299___y 763 TGGACGTAG--------------- 771
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