Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00531 and BPUM_0275
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00531___amhX.1.24716.seq
# -bsequence dna-align/BPUM_0275___amhX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00531___amhX-BPUM_0275___amhX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00531___amhX-BPUM_0275___amhX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00531___amhX
# 2: BPUM_0275___amhX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity: 790/1210 (65.3%)
# Similarity: 790/1210 (65.3%)
# Gaps: 140/1210 (11.6%)
# Score: 2389.5
#
#
#=======================================
BSNT_00531___ 1 ATG-CAAAAGCTTT--CAGAAGACATGAAACAAACCATTATGGACATCTT 47
||| ||| |||| ||.|.||||||.|.|||||..|.|..||||||||
BPUM_0275___a 1 ATGACAA---CTTTGACAAACGACATGCAGCAAACGGTGAAAGACATCTT 47
BSNT_00531___ 48 CGAGCATCTGCACGCGAATCCTGAAGTCAGCTGG-----AAGGAATATGA 92
.||.||.||||||||..|.||||||.|||||||| ||.|||||.||
BPUM_0275___a 48 TGAACACCTGCACGCTCACCCTGAAATCAGCTGGGAAGAAACGAATACGA 97
BSNT_00531___ 93 -GAC--AACTTCA----TTTTTGAAACAAAAGCTTGAGGATTTAGGGTGC 135
|.| |.|||.| ||.|||||..||| ||||.||.
BPUM_0275___a 98 CGGCTTATCTTGAGGACTTATTGAAGAAAA------------TAGGCTGT 135
BSNT_00531___ 136 CGGACGCGCACGTTTTCAGACTGCACCGGGGTTGTCGGCGAAATCGGCTC 185
|..||.||.||.|||...|||||.||.||.||..||||.|||||.||...
BPUM_0275___a 136 CAAACTCGAACATTTGACGACTGTACAGGAGTGATCGGTGAAATTGGAGA 185
BSNT_00531___ 186 AGGCTCACCTGTTGTAGCGGTACGCGCTGATATTGACGCGCTGTGGCAGG 235
|||.|||||.||.||.|||||..|.||.||||||||.||.||.|||||||
BPUM_0275___a 186 AGGTTCACCAGTGGTCGCGGTGAGAGCCGATATTGATGCACTTTGGCAGG 235
BSNT_00531___ 236 AGGTTAACGGCACATTTCGCGCCAACCATTCCTGCGGACACGATTCACAT 285
|.||..|.||....||||..|||||.|||||.||.||.||||||.|||||
BPUM_0275___a 236 AAGTAGATGGTGAGTTTCAAGCCAATCATTCATGTGGTCACGATGCACAT 285
BSNT_00531___ 286 ATGACAATGGCATTGGGCACGTTAATGCTGC--TAAAAAAACAACCTGAG 333
|||||||||||..|.|||||.||.||| || |||||.||.|| |||
BPUM_0275___a 286 ATGACAATGGCTCTCGGCACCTTCATG--GCATTAAAAGAAAAA---GAG 330
BSNT_00531___ 334 CTTCCGAAGGGTACAATCCGTTTTATCTTTCAGCCGGCAGAAGAAAAAGG 383
||.||.||.||.||.|||||.||.||.||||||||.||.||.||||||||
BPUM_0275___a 331 CTCCCAAACGGCACCATCCGGTTCATTTTTCAGCCTGCTGAGGAAAAAGG 380
BSNT_00531___ 384 CGGCGGCGCCTTGAAAATGATAGAAGAAGGCGTGCTTGATGATATCGACT 433
||||||.||.|||||||||||.||||||||.|||||.|..||..|.||.|
BPUM_0275___a 381 CGGCGGTGCGTTGAAAATGATTGAAGAAGGTGTGCTAGCAGACGTAGATT 430
BSNT_00531___ 434 ATTTGTATGGCGTTCACGTCCGTCCGATCCAGGAAACACAAAACGGCCGC 483
|.||.||.||.||.||.||.||.||.||.||.||||||..||||||.|||
BPUM_0275___a 431 ACTTATACGGAGTACATGTGCGCCCAATTCAAGAAACATTAAACGGACGC 480
BSNT_00531___ 484 TGCGCTCCGTCTATTCTGCACGGATCAAG---CCAGCACATTGAGGGAAC 530
|||||.||..|.|||.||||.|||||.|| .||..|||| .||.||
BPUM_0275___a 481 TGCGCACCTGCAATTTTGCATGGATCGAGTAATCATTACAT---CGGCAC 527
BSNT_00531___ 531 GATCATCGGGGAAGAGACTCATGGCGCCCGTCCGCACCTCGGGAAAAACA 580
.||.||.||.||.||..||||.||.||.||.|||||.||.||||..|||.
BPUM_0275___a 528 AATTATTGGTGAGGAAGCTCACGGTGCACGCCCGCATCTAGGGATCAACG 577
BSNT_00531___ 581 GCATTGAAATTGCGGCATTT---CTTGTACATAAG-CTCGGACTCATTCA 626
..|||||| |.|||.|.| ||.||.|| ||| ||||..|..||.||
BPUM_0275___a 578 TGATTGAA---GTGGCTTCTACCCTCGTGCA-AAGACTCGCGCATATCCA 623
BSNT_00531___ 627 TATTGACCC-------GCAAATCCCGCATACCGTCAAAATGACAAAACTT 669
|.|.||||| ||| |||.|.||.||||||||.||.||.
BPUM_0275___a 624 TGTCGACCCAAGAGTTGCA-------CATTCTGTGAAAATGACCAACCTA 666
BSNT_00531___ 670 CAAGCCGGCGGTGAAAGCTCTAACATCATTCCAGGAAAAGCATCGTTCAG 719
||.||.|||||.|..||.||.||||||||.||.||.|||||.||.||.|
BPUM_0275___a 667 CATGCTGGCGGAGGCAGTTCAAACATCATCCCTGGCAAAGCTTCTTTTA- 715
BSNT_00531___ 720 CCTT-GATTTGCGCGCACAGACCAATGAAGCCATGGAGGCGTTAATCGCC 768
|.|| |||.|..|.|||||.||.|||||||..||||| |.|| |
BPUM_0275___a 716 CATTAGATGTCAGAGCACAAACAAATGAAGTGATGGA----TGAA----C 757
BSNT_00531___ 769 GAGACA--------GAAAGAGCC------TGTGAAGCGGCCGCCGCTGCA 804
.|||.| ||||||||| |.||.| ||.|.|||.
BPUM_0275___a 758 TAGAAAAAGAAATTGAAAGAGCCGTACATTCTGTA------GCAGATGCC 801
BSNT_00531___ 805 TTCGGCGCAAAAATCGATCTGCA-----AAAAGAACACAGCCTTCCTGCG 849
||.||||| .||.|| |.|| ||.|||.||..|.||.|||||.
BPUM_0275___a 802 TTTGGCGC----TTCCAT-TTCACTTTCAACAGATCATCGTCTACCTGCC 846
BSNT_00531___ 850 GCAACACAAAACAAAGAAGCTGAAGCGATCATGGCAGAAGCCATT--ACA 897
|||||....||..|.|||||.|....|||.|||.|..|||||||| |.|
BPUM_0275___a 847 GCAACTTTGAATGAGGAAGCCGTCCAGATGATGTCTCAAGCCATTGAAAA 896
BSNT_00531___ 898 GATATCATCGGGGC--TGAGCGGCTTGATGACCCGCTTGTCACTACCGGC 945
|.|.|.| ||| .||||.|||.|||...|||||.||.||.||.||.
BPUM_0275___a 897 GGTTTTA----GGCAAGGAGCAGCTCGATCCGCCGCTCGTAACGACAGGT 942
BSNT_00531___ 946 GGAGAGGATTTCCATTTTTACGCCGTGAAGGTGCCGAATCTGAAAACAAC 995
|||||||||||.||.|||||.||.|..|||.|.|||.||.|.|||.|.||
BPUM_0275___a 943 GGAGAGGATTTTCACTTTTATGCTGCAAAGCTTCCGCATATCAAATCCAC 992
BSNT_00531___ 996 GATGCTCGGACTAGGCTGCGGGCTCCAGCCGGGACTCCATCATCCGCACA 1045
||||||.||..|||||||.|..||..||||.||.||.||||||||..|.|
BPUM_0275___a 993 GATGCTTGGTTTAGGCTGTGATCTAGAGCCTGGTCTACATCATCCATATA 1042
BSNT_00531___ 1046 TGACATTTGACAGAAATGCGATGTTCAACGGCATTCACATTTT-AGCGAA 1094
|||||||.|||.|...|||.||.||.|..||||||.|.||||| |..|||
BPUM_0275___a 1043 TGACATTCGACCGTTCTGCTATTTTTACTGGCATTGAGATTTTGACTGAA 1092
BSNT_00531___ 1095 TGCCGTATTA-AAAACTTTTCAAAAGGCTG-ATTCACCCGCTGCCGCTTA 1142
||.|| ||| .||||..|||| ||.| |||||.|
BPUM_0275___a 1093 -GCTGT-TTATCAAACCCTTCA----GCAGCATTCATC------------ 1124
BSNT_00531___ 1143 CGTAAAATAA 1152
||||
BPUM_0275___a 1125 ------ATAA 1128
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