Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02611 and BPUM_0221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_02611___ylqB.1.24716.seq
# -bsequence dna-align/BPUM_0221___ylqB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02611___ylqB-BPUM_0221___ylqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02611___ylqB-BPUM_0221___ylqB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02611___ylqB
# 2: BPUM_0221___ylqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 570
# Identity: 302/570 (53.0%)
# Similarity: 302/570 (53.0%)
# Gaps: 171/570 (30.0%)
# Score: 580.5
#
#
#=======================================
BSNT_02611___ 1 ATGAAAAAAATC------GGTTTATTGTTTATGTTATG--TCTGGCAGCC 42
|||||||||||| |.|||.|| |.|||.|| || ||| |
BPUM_0221___y 1 ATGAAAAAAATCATGTTTGCTTTCTT-TCTATCTT-TGCTTCT------C 42
BSNT_02611___ 43 CTGTTTACAATAGGTTTTCCGGCACA-GCA-AGCAGACGCTGCTGAGGCA 90
.|.||..|||.| ||| ||||| ||| ||.|.|| |||..
BPUM_0221___y 43 GTATTCCCAACA---TTT---GCACATGCAGAGGAAAC-------AGGAG 79
BSNT_02611___ 91 CCTTATAAGGCTTCGATC-----ACAAATAT--CAGCA-CAGATGGAGGG 132
|..||..||..|.||.|| ||||.|.| ||||| |.||| ||.|
BPUM_0221___y 80 CAGTACCAGCATCCGTTCAAGTAACAAGTGTCACAGCAGCCGAT--AGTG 127
BSNT_02611___ 133 GTTTACGGTAAAATCAATTACGGACAAG---GTCAATAT----TGG---- 171
|||| |.|.||||||||..|.| ||.||||| |||
BPUM_0221___y 128 GTTT-------AGTGAATTACGGCTATGGCAGTAAATATCGCGTGGGTTC 170
BSNT_02611___ 172 --------------CGAGTCAAG------TACAATATTACAGTAAGCGGC 201
||..|.||| ||.||.|| |.|||.||
BPUM_0221___y 171 TTATTATCCAGCTACGTTTAAAGGAACACTAAAAGAT----GCAAGTGG- 215
BSNT_02611___ 202 AAATTACTC--GACCAAAACGGACAGCCAGTGCCAAACGCGCCCGTAAGA 249
|||| ||| |.|||| .|||||.|| ||| || |....
BPUM_0221___y 216 AAAT--CTCATGCCCAA-----TCAGCCGGT-CCA-----GC---TTTAT 249
BSNT_02611___ 250 TTTGAAGCGGACACGAAGGTCGGAAA-CACA-ACACAAACTGCTTCAGGA 297
||||||||.|.|| || ||| ||.| .|.|||||.||..||||.
BPUM_0221___y 250 TTTGAAGCAGCCA------TC--AAATCATATGCTCAAACAGCGACAGGC 291
BSNT_02611___ 298 ACAACTGATGCAAACGGAACATT-----TGAGGTTCCAATGTATTTGGGG 342
|||||.||.|..||||||..||| |||.|||.||| ||...||
BPUM_0221___y 292 ACAACAGACGGGAACGGACAATTTTCACTGACGTTTCAA-GTTCCTG--- 337
BSNT_02611___ 343 CCAGCTGCTGGTTACTATACGTAT--TACACAT--------CTGTTTCCG 382
|.|.|||.||.|||.| || |||| || ||| |
BPUM_0221___y 338 -CCGGTGCAGGCTACCA-----ATCATACA-ATAATGCAGGCTG-----G 375
BSNT_02611___ 383 T----TCATTACTATGACATCATCCCATTCAGAGTTTTTTCTGGTGAGTC 428
| .||||||||.||..||.|.|||.|.|.| |||..||.| .
BPUM_0221___y 376 TCTACACATTACTACGATGTCGTTCCAGTGACA-----TTCACGTCA--A 418
BSNT_02611___ 429 AAGAC----TGGTA---TCCACTGATAAC-AGCCTTTATCATTTCGCCT- 469
||||| .|.|| ||.|.|| |.|| ||..|.||.|||||.||.|
BPUM_0221___y 419 AAGACATCAAGCTATCTTCAAATG-TCACAAGTGTGTACCATTTGGCATA 467
BSNT_02611___ 470 ---ATCAAGTAAGAAGATAA 486
||||.||.| .|||
BPUM_0221___y 468 TACATCACGTTA----CTAA 483
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