Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00236 and BPUM_0118
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:11
# Commandline: needle
# -asequence dna-align/BSNT_00236___rplR.1.24716.seq
# -bsequence dna-align/BPUM_0118___rplR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00236___rplR-BPUM_0118___rplR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00236___rplR-BPUM_0118___rplR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00236___rplR
# 2: BPUM_0118___rplR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 373
# Identity: 313/373 (83.9%)
# Similarity: 313/373 (83.9%)
# Gaps: 20/373 ( 5.4%)
# Score: 1357.0
#
#
#=======================================
BSNT_00236___ 1 ATGATTACGAAAACTAGCAAAAATGCTGCTCGTCTTAAAAGACACGCTCG 50
|||||||||||||||||||||||.|||.||||||||||||||||||||||
BPUM_0118___r 1 ATGATTACGAAAACTAGCAAAAACGCTACTCGTCTTAAAAGACACGCTCG 50
BSNT_00236___ 51 TGTTCGCGCTAAACTTTCCGGTACTGCTGAAAGACCGCGCCTGAACGTTT 100
||||||.||.||||||||.|||||||||||||||||.|||||.|||||||
BPUM_0118___r 51 TGTTCGTGCGAAACTTTCAGGTACTGCTGAAAGACCTCGCCTTAACGTTT 100
BSNT_00236___ 101 TCCGTTCTAACAAGCACATTTACGCTCAAATCATCGATGATGTAAATGGT 150
||||||||||||||.||||.||.||||||.|.||.||||||||.||.|||
BPUM_0118___r 101 TCCGTTCTAACAAGAACATCTATGCTCAAGTAATTGATGATGTTAACGGT 150
BSNT_00236___ 151 GTAACACTTGCTAGTGCATCTACTCTCGATAAAGACTTGAACGTTGAAAG 200
||||||||||..|||||.||||||||.|||||||| ||.||||
BPUM_0118___r 151 GTAACACTTGTAAGTGCTTCTACTCTTGATAAAGA--------TTTAAAG 192
BSNT_00236___ 201 CACTGGAG-ATACTTCT---------GCTGCTACTAAAGTTGGAGAATTA 240
.|.||| |||.|||| |||||||||||||||||.|||.|.
BPUM_0118___r 193 --ATCGAGAATAGTTCTGACGCTGCAGCTGCTACTAAAGTTGGCGAACTT 240
BSNT_00236___ 241 GTTGCAAAACGCGCTGCTGAAAAAGGCATTTCTGACGTAGTATTTGACCG 290
|||||||||||.||||.|||||||||.||.|||.||||.|||||||||||
BPUM_0118___r 241 GTTGCAAAACGTGCTGTTGAAAAAGGAATCTCTAACGTGGTATTTGACCG 290
BSNT_00236___ 291 TGGCGGATACTTATACCATGGACGTGTAAAAGCTTTGGCTGATGCCGCTC 340
.||.|||||||||||.||||||||||||||||||.|.|||||.||.||||
BPUM_0118___r 291 CGGAGGATACTTATATCATGGACGTGTAAAAGCTCTAGCTGAAGCTGCTC 340
BSNT_00236___ 341 GTGAAGCTGGACTTAAATTTTAA 363
||||.||||||||||||||||||
BPUM_0118___r 341 GTGAGGCTGGACTTAAATTTTAA 363
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