Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02210 and BL03734
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_02210___ykmA.1.5803.seq
# -bsequence dna-align/BL03734___ohrR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02210___ykmA-BL03734___ohrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02210___ykmA-BL03734___ohrR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02210___ykmA
# 2: BL03734___ohrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity: 308/481 (64.0%)
# Similarity: 308/481 (64.0%)
# Gaps: 65/481 (13.5%)
# Score: 890.5
#
#
#=======================================
BSNT_02210___ 1 ATGGAAAATAAATTTGATCATATGAAATTGGAGAATCAGCTTTGTTTTTT 50
||||.|||..|||||||.|||||||...|.||.|..||||||||.|||.|
BL03734___ohr 1 ATGGCAAACGAATTTGAACATATGAGGCTTGACAGACAGCTTTGCTTTCT 50
BSNT_02210___ 51 GCTATATGCGAGTTCGCGGGAAATGATAAAGCAATACAAGCCTCTGCTTG 100
.||.|||||.||.|||||.|||||||..||||..||||||||||||||||
BL03734___ohr 51 CCTTTATGCAAGCTCGCGTGAAATGACGAAGCTTTACAAGCCTCTGCTTG 100
BSNT_02210___ 101 ATAAGCTGAATATAACATACCCCCAATATTTGGCTTTGCTTTTGTTATGG 150
||.|.||.|||||.||.||.||.||.||..|.||..|.|||||.||||||
BL03734___ohr 101 ATGAACTCAATATTACGTATCCGCAGTACCTCGCGCTCCTTTTATTATGG 150
BSNT_02210___ 151 GAACAC---GAA--ACGCTTACTGTCAAAAAAATGGGCGAACAGCTGTAT 195
|||||| ||| |.|| |||||||.|||||||.|.|..||.|||
BL03734___ohr 151 GAACACGGGGAATTAAGC-----GTCAAAACAATGGGCAAGCTCCTTTAT 195
BSNT_02210___ 196 TTAGATTCAGGAACGCTCACTCCTATGCTTAAACGAATGGAACA--ACAG 243
.|.|||||.||.||.||.||.||.|||||.||..|||||||.|| ||.|
BL03734___ohr 196 CTCGATTCCGGCACACTGACGCCGATGCTGAAGAGAATGGAGCAGCACGG 245
BSNT_02210___ 244 GGTTTGATTACGAGAAAAAGATCAGAAGAGGATGAGCGGTCCGT-GTTGA 292
|.||| |.||.|||.|..|.|||...||.|||||.|||||.|| .|||
BL03734___ohr 246 GCTTT--TAACAAGAGAGCGGTCACCTGAAGATGAACGGTCTGTAATTG- 292
BSNT_02210___ 293 TCAGCCTGACAG-AGGACGGAGCGTTATTAAAGGATAAAGCGGTTGA--- 338
||||.||||||| ||| |||...|..|.|..|.||.||||| |
BL03734___ohr 293 TCAGACTGACAGCAGG-CGGCCAGGCACTCCAAGAAAAAGC-----AAGC 336
BSNT_02210___ 339 --CATTCCAGAG-ACA--ATTCTGGGGCTCTCAAAGCAGTCTG--GG--G 379
||||||..|| ||| || |.|.||.|.|..|||| || |
BL03734___ohr 337 AGCATTCCGCAGCACATGAT-------CGCCCAGACCGATCTGTCGGCTG 379
BSNT_02210___ 380 AGGATCTCAAACAGTTAAA--ATCCGCTCTATATACATTGCTGGAAACAC 427
..||.||.|||.|.||.|| |..|||| |..||.|.||..|| |
BL03734___ohr 380 GCGAACTGAAAAACTTGAAGCAAACGCT-TGAATCCCTTCTTG------C 422
BSNT_02210___ 428 TTCAT----CAAAAAAATTGA---------- 444
||||| .|||||||..||
BL03734___ohr 423 TTCATTGACGAAAAAAACAGATGTGCTGTAA 453
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