Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05344 and BL03594
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:27
# Commandline: needle
# -asequence dna-align/BSNT_05344___yvkN.1.5803.seq
# -bsequence dna-align/BL03594___yvkN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05344___yvkN-BL03594___yvkN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05344___yvkN-BL03594___yvkN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05344___yvkN
# 2: BL03594___yvkN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 273
# Identity: 154/273 (56.4%)
# Similarity: 154/273 (56.4%)
# Gaps: 84/273 (30.8%)
# Score: 385.5
#
#
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BSNT_05344___ 1 ATG---GAGAAAGATCCCAGTGACTATACAGTAACA--------CAAGAA 39
||| .|||| ||| |..|.||||| |...|| |.||..
BL03594___yvk 1 ATGAAACAGAA--ATC---GGAAGTATAC-GCCTCATCCGCCTCCCAGCT 44
BSNT_05344___ 40 TC--AGTGTTAAAGCTGATTCATGAACAAAAAAGAATGAATCGTGAAATG 87
|| ||| ||||||||.|||||||||||.|||||||..|| |
BL03594___yvk 45 TCTTAGT-------CTGATTCAGGAACAAAAAAGGATGAATCAGGA---G 84
BSNT_05344___ 88 ATCG----CCGAGCTT------GAGCAGATTCACGGACCCTTC-CCGATC 126
|||| |||| || ||.|| |||| |.||.| |||.|.
BL03594___yvk 85 ATCGTGAACCGA--TTGGAATCGATCA-ATTC-----CGCTCCTCCGCTT 126
BSNT_05344___ 127 TCTCA-CGATATCCAATATATAAAAGTGCTGCTCGACAGCAGCAACACGC 175
|| || |||.||||..|||.||||.||.|||||..|||||||||.|||.|
BL03594___yvk 127 TC-CAGCGAAATCCGCTATTTAAAGGTTCTGCTGAACAGCAGCAGCACCC 175
BSNT_05344___ 176 ATATTGTTCAAGATTTAATGAGTGTAAG------------TAAGCAG--C 211
||||| ||.||.|.| ||||||| ||| |.|||.| |
BL03594___yvk 176 ATATT-TTAAACAGT--ATGAGTG-AAGCGACCAAACACATCAGCCGGAC 221
BSNT_05344___ 212 TGTA---TAAGAAGACTTTGTAA 231
||.| |||
BL03594___yvk 222 TGAACGTTAA------------- 231
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