Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04459 and BL03288
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04459___ytkD.1.5803.seq
# -bsequence dna-align/BL03288___ytkD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04459___ytkD-BL03288___ytkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04459___ytkD-BL03288___ytkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04459___ytkD
# 2: BL03288___ytkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity: 361/487 (74.1%)
# Similarity: 361/487 (74.1%)
# Gaps: 20/487 ( 4.1%)
# Score: 1228.5
#
#
#=======================================
BSNT_04459___ 1 ATGTACGAGTTTAAAGATTATTATCAGAATACTGTTCAGCTTTCCTTTGA 50
||||||||.||||||||||.|||.|..|||||.|||||||||||.|||||
BL03288___ytk 1 ATGTACGAATTTAAAGATTTTTACCGTAATACGGTTCAGCTTTCTTTTGA 50
BSNT_04459___ 51 CGATCAGCCTTTCTCGGACAG-CCCGAAGCATGTCTGGGTGATTTGCCGT 99
..|..|.|||||.|| .|.|| .||.||||||||.||||||||.||||||
BL03288___ytk 51 GAAGGAACCTTTTTC-AAAAGAACCAAAGCATGTATGGGTGATCTGCCGT 99
BSNT_04459___ 100 TTTGGCGGCAAATGGCTTTTAACAGAACATGAGGACAGAGGCTATGAGTT 149
|..|..|...|||||||..|.|||.|.|||.|||||||.|||..|||.||
BL03288___ytk 100 TACGAGGATCAATGGCTGCTGACAAATCATAAGGACAGGGGCCGTGAATT 149
BSNT_04459___ 150 TCCAGGCGGGAAAGTAGAGCCGATGGAGTGCGCAGAAGAGGCTGCGCTCC 199
.||.|||||.|||||.||.||||..||...|||.||.||.||.||..|.|
BL03288___ytk 150 CCCCGGCGGCAAAGTCGAACCGAGCGAAAACGCTGAGGAAGCGGCTTTGC 199
BSNT_04459___ 200 GGGAAGTAAAGGAAGAGACGGGCGCGAGAGTCA-AAAGCCTCAAGTATCT 248
|||||||.||||||||.||||||||....||.| |||| ||.|..|||||
BL03288___ytk 200 GGGAAGTGAAGGAAGAAACGGGCGCTGTCGTAAGAAAG-CTGACCTATCT 248
BSNT_04459___ 249 CGGACAGTATAAAGTTCTCGGAAAAGAAAAAGTGATTGTAAAAAATATAT 298
||||||.|||||||||||.||.|..||.||||||||.||.||||||||.|
BL03288___ytk 249 CGGACAATATAAAGTTCTTGGCAGGGAGAAAGTGATCGTCAAAAATATTT 298
BSNT_04459___ 299 ATTTTGCAGATATAGAAAAGCTTGAAAAGCAGGCTGA-TTACTTTGAAAC 347
|||||||.|||||.||||||.|.|||||.|| ||.|| .||||.|||.||
BL03288___ytk 299 ATTTTGCCGATATCGAAAAGATAGAAAAACA-GCAGACGTACTATGAGAC 347
BSNT_04459___ 348 GAAAGGCCCGGTTTTGTTTCACGAG-CTGCCGGAGAACCTTTCCCGCAAT 396
|||.||.||.|||||| .|.|.||| ||.|||.||.| |..|||||.
BL03288___ytk 348 GAATGGTCCTGTTTTG-CTGAAGAGCCTCCCGAAGGA----TATCGCAAA 392
BSNT_04459___ 397 A---AAAAATT-CAGCTTTATTATGAAGGATTCCGTTCTTCCGATCAG-C 441
| ||||||| |||.|||||||||||.||||||||.||..||||||| |
BL03288___ytk 393 AAACAAAAATTACAGTTTTATTATGAAAGATTCCGTCCTGACGATCAGTC 442
BSNT_04459___ 442 TTGAAAAAACTGAAAGAATCTGG-ATGGATTGAATAA 477
||| ||||.||||||.|..|.|| || .||..|||||
BL03288___ytk 443 TTG-AAAAGCTGAAAAAGGCCGGCAT-CATCAAATAA 477
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