Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02493 and BL03001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_02493___ylbJ.1.5803.seq
# -bsequence dna-align/BL03001___ylbJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02493___ylbJ-BL03001___ylbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02493___ylbJ-BL03001___ylbJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02493___ylbJ
# 2: BL03001___ylbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1298
# Identity: 859/1298 (66.2%)
# Similarity: 859/1298 (66.2%)
# Gaps: 148/1298 (11.4%)
# Score: 2677.0
#
#
#=======================================
BSNT_02493___ 1 ATGAACTTGTCGAAGATTAATACACTTTTGATTGCCTCGTTTT--TTCTT 48
|||.||.||||.|||.|.||.|||||..||||||| |||||| |.|||
BL03001___ylb 1 ATGGACATGTCAAAGGTAAAGACACTCATGATTGC--CGTTTTGCTGCTT 48
BSNT_02493___ 49 TTTTTAACAGCGACTGTCATCTCACATCCACAGGCTTCATTCGAAGCCTC 98
|..||.|||||..|.|||||..|.||.||.||.|..|||||.||.||.||
BL03001___ylb 49 TCATTTACAGCCGCCGTCATTACCCACCCGCAAGAATCATTTGACGCTTC 98
BSNT_02493___ 99 TAAAACCGGGCTGTCTATGTGGTGGGAGGTTGTGTTTCCGTCATTGCTGC 148
|||||..||.||..|.||||||||||||||.||.||.||.||..|..|||
BL03001___ylb 99 TAAAAGTGGACTTGCCATGTGGTGGGAGGTCGTATTCCCTTCCCTTTTGC 148
BSNT_02493___ 149 CATTTTTTATTCTGTCCGAACTCTTAATCGGCTTTGGCATTGTGCGGTTT 198
|.|||||||||.|.||.||.|||||.|||||.|||||..|.||..|||||
BL03001___ylb 149 CTTTTTTTATTTTATCAGAGCTCTTGATCGGGTTTGGTGTCGTCAGGTTT 198
BSNT_02493___ 199 GTCGGTGTTTTGCTTGAGCCTTTTATGCGGCCGATCTTTCGCGTGCCGGG 248
|||||..|.|||||.||||||||.|||.|.|||.|.||.|||||.||.||
BL03001___ylb 199 GTCGGGCTGTTGCTCGAGCCTTTCATGAGACCGGTGTTCCGCGTACCCGG 248
BSNT_02493___ 249 TGTCGGCGGCTTCGTTCTTGCTATGGGAATGGCATCAGGAAACCCAGCGG 298
.|||||.||.|||||.||.||.||||||||||||||.||||||||.||.|
BL03001___ylb 249 CGTCGGAGGGTTCGTGCTCGCAATGGGAATGGCATCGGGAAACCCGGCCG 298
BSNT_02493___ 299 GCGCAAAACTCACTGCCCGTCTGCGGCAGGAAAATCAGATTTCAAGAGTA 348
||||||||||.|||.|..|.|||.|.||||||...||||||||..|.||.
BL03001___ylb 299 GCGCAAAACTGACTTCAAGGCTGAGACAGGAACGGCAGATTTCCCGGGTC 348
BSNT_02493___ 349 GAGGCAGAACGGCTCGCGTCGTTTACCAATTCTTCAAACCCGCTCTTTAT 398
||.|||||.||||||||.||.||.|||||.||.||.||||||||.|||||
BL03001___ylb 349 GAAGCAGAGCGGCTCGCTTCATTCACCAACTCATCTAACCCGCTGTTTAT 398
BSNT_02493___ 399 TTTCGGCGCTGTTGCCGTCGGTTTCTTTCAAAACGCGTCACTAGGCATTT 448
||||||.||.|||||.|||||.||.||.||.||..|.||.||.|||.||.
BL03001___ylb 399 TTTCGGAGCCGTTGCGGTCGGCTTTTTCCATAATCCTTCTCTTGGCGTTG 448
BSNT_02493___ 449 TATTAGCTT----CTGCACACTATTTGGGGAATCTTGCCGTCGGTTTAAC 494
| |||| |.||.||.||||||||.|||.|.||.||.||..|.||
BL03001___ylb 449 T----GCTTGCGGCGGCCCATTATTTGGGCAATTTCGCAGTTGGACTGAC 494
BSNT_02493___ 495 AATGCGTTCCTATGGCCGCAAGGAAG--AGCAGCAACTCAG-AAGAAAGA 541
.|||||..|.||.||..|.||.|||| |.|.|||.|.|.| ..||||||
BL03001___ylb 495 GATGCGCACTTACGGAAGAAAAGAAGAAAACCGCACCGCCGTGCGAAAGA 544
BSNT_02493___ 542 AAACGATACCTTTCCCTTCAGTCAAAGATGCTTTACACGCTCTTCATACC 591
| |.|.|||.|.||||||.|.|||||.||.|||.|.||.||.|||...
BL03001___ylb 545 A---GCTTCCTGTGCCTTCAATTAAAGAAGCCTTAAAAGCGCTCCATCAG 591
BSNT_02493___ 592 GCCAGACTTGCAGAAAAACGGCCCTTGGGTAAAATTTTAGGCGACGCCGT 641
||.|||||||.||||||.|||||..|.||.|||.||||..||||.||.||
BL03001___ylb 592 GCAAGACTTGAAGAAAAGCGGCCGCTCGGCAAACTTTTGAGCGATGCTGT 641
BSNT_02493___ 642 GACGTCTTCTGTTCAAACGCTTCTTATGGTAGGCGGCTTTATTATTTTAT 691
.|..||.||.|||||||||||.||.|||||.||||||||.||.|||.|.|
BL03001___ylb 642 CATCTCCTCCGTTCAAACGCTGCTAATGGTGGGCGGCTTCATCATTCTTT 691
BSNT_02493___ 692 TTTCTGTCTTCAAT--CGACTGTTGTCAGTGGTCCAGCTGACTGATGTTT 739
||||.||.||.||| | |.|.|| ||.|||.|.||..|.||.||..||.
BL03001___ylb 692 TTTCGGTTTTTAATAAC-ATTCTT-TCTGTGATGCACATCACCGACATTC 739
BSNT_02493___ 740 TGTCTGTTTTCAC---AAAAGGAGCACTGACTTTGTTTCAGCTTCCGAC- 785
| ||..||| |.||| |.|||.|||| .|.||| |
BL03001___ylb 740 T-----TTCGCACGCGACAAG----AATGATTTTG--ACGGCT-----CT 773
BSNT_02493___ 786 TCAATTG------------GACATTCCGCTTTTATCAGGGA-TGTTTGAA 822
||||||| ||.|..||..|.||||| |||| |||||||.
BL03001___ylb 774 TCAATTGCCCGGTGATTTTGATAAGCCTTTATTATC-GGGATTGTTTGAG 822
BSNT_02493___ 823 ATTACATTAGGCAGCAAGCTTGTCAGCGAGACAGATGTTTCTCTTCTGCA 872
|||||..|.||||||||.||.|||||||..||.||||...|.|||||.||
BL03001___ylb 823 ATTACGCTCGGCAGCAAACTGGTCAGCGCAACGGATGCGGCGCTTCTCCA 872
BSNT_02493___ 873 AAAAGCCATTATCGTCAGCTTTATTCTCGGGTTT-AGCGGCTTTTCCGTA 921
..||||..|.||||||||||||||| |.|||||| ||||||||.|.|||.
BL03001___ylb 873 GCAAGCGGTGATCGTCAGCTTTATT-TTGGGTTTCAGCGGCTTCTGCGTC 921
BSNT_02493___ 922 CAAGCTCAGGTGGCAGGTATTTTATCGGAAACCGACATTCGATTTAAACC 971
|||||.|||||.|||||.|||.|..|.|||||.||.||.||.|||||.||
BL03001___ylb 922 CAAGCGCAGGTTGCAGGCATTCTTGCTGAAACGGATATCCGCTTTAAGCC 971
BSNT_02493___ 972 ATTCTTTATCGCACGTTTGCTGCAGGGCGTTTATGCCGCTGTCTTCGTCA 1021
.||.||||||||.||..|.||.|||||..|||||||.||..||||.||..
BL03001___ylb 972 GTTTTTTATCGCTCGCATCCTCCAGGGAATTTATGCAGCGATCTTTGTTC 1021
BSNT_02493___ 1022 TGCTTTTATGGAAACCTCTTTACACGGCATGGCATGATCCATATCAGTAT 1071
|..||.|.|||||.||||||||||| ||| || |
BL03001___ylb 1022 TTATTCTTTGGAAGCCTCTTTACAC-----------------ATC-GT-T 1052
BSNT_02493___ 1072 GTATTTAAATCTCTTAAC--AGCAGTGACATGCCAACTGCCTTTAT---- 1115
.||| |||| ..|| |||.| |.|..|| |||||.|
BL03001___ylb 1053 CTAT-----TCTC-CGACGGAGCCG------GTCTTCT-CCTTTCTGACG 1089
BSNT_02493___ 1116 -------AAACGG-----------CTGGA-ATCTG-----CTTGTGC--A 1139
|.|||| ||||| ||.|| |||..|| |
BL03001___ylb 1090 GCCGGGAAGACGGAACCTTTCTTTCTGGAGATGTGGAACACTTTAGCAGA 1139
BSNT_02493___ 1140 GATCGGACCTGCT-GTCACACTATGCGCGCTGTTTACGTACATTATCATT 1188
||||||.|| ||| .|.|||.|..||.|.||..|.|..|| |||||||
BL03001___ylb 1140 GATCGGTCC-GCTCCTAACAATCGGCACCCTTCTCATCTA---TATCATT 1185
BSNT_02493___ 1189 TTTTCTTACAGACTGACAAACGGAAC---------AAAAAAAGGATGA 1227
.||| .||.||||....|| ||||| ||||
BL03001___ylb 1186 CTTT--------ATGCCAAATCTTACGCCCCTGTTAAAAA----ATGA 1221
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