Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03352 and BL02930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03352___ypjB.1.5803.seq
# -bsequence dna-align/BL02930.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03352___ypjB-BL02930.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03352___ypjB-BL02930.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: BL02930
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity: 540/858 (62.9%)
# Similarity: 540/858 (62.9%)
# Gaps: 120/858 (14.0%)
# Score: 1477.5
#
#
#=======================================
BSNT_03352___ 1 ATGAAACGAAAGCTGACGATCTGTTTGTTGATTGCACTTATTTTTTATAA 50
||||.|||||||.|||...|.||..||.||.||||.|||.|||||
BL02930 1 ATGATACGAAAGGTGATCCTTTGCATGATGCTTGCGCTTGTTTTT----- 45
BSNT_03352___ 51 TGGAAATGCCAAGGC-----TGCAGAGCG-GGGAAGCCTCG-------AG 87
..||| ||| || |.|||| ..|||.|.||| ||
BL02930 46 ----CCTGC---GGCCGGTTTG-AAAGCGAAAGAATCATCGGCTTTGCAG 87
BSNT_03352___ 88 GAATTGAATGATTTATCCGATACAGTCTTTCAAATGACCCGACAGGCAAA 137
|||||||..||..|.||.|||||.||.||.||..|.||..|.|||.|..|
BL02930 88 GAATTGACGGAACTGTCGGATACGGTATTCCAGCTAACAAGGCAGTCTCA 137
BSNT_03352___ 138 ATATGAAGAGGCGCTTC-AAGTCTTGGAGTATTTTGAAAAAACATTAAAA 186
||||||.||.|||.|.| ||.|||| .|.||.||||||||||...|.|||
BL02930 138 ATATGAGGAAGCGGTACAAATTCTT-CAATACTTTGAAAAAAGGCTGAAA 186
BSNT_03352___ 187 TCCGCTGAGAAAAA----ACAGCAAGACCCCATGCTAACGGGATCCCAAA 232
.|.||.||||||.| |||| |.|| .|||.|.||.||.||..|||
BL02930 187 GCTGCGGAGAAAGACGGGACAG-AGGA---TATGATGACAGGCTCGGAAA 232
BSNT_03352___ 233 TCCGTCAAATCACATTGGGCTATAATGATATGGTTCGGAGTTT--AAAGC 280
||||.||..|||...|||.||||.||||||.|.|....|||.| |||||
BL02930 233 TCCGCCAGGTCAGTCTGGCCTATCATGATACGCTGAAAAGTCTGGAAAGC 282
BSNT_03352___ 281 AAGCTGATACATCAGA-----CACAC----AAAAACTCAGAGCAGCCGCG 321
.| ||| ||||| |.|||.|.|.|||.|||||.
BL02930 283 GA-----------AGAGGTCGCACACCAGGAGAAATTTAAAGCCGCCGCC 321
BSNT_03352___ 322 CAGTTCAGGATGCTGATGGATGCGGTTGAAAATC-GGTC-TGACCCGCTT 369
|||||.||.|||||||||||.||..||| |||| |.|| |||.|||||.
BL02930 322 CAGTTTAGAATGCTGATGGACGCCATTG--AATCAGATCATGATCCGCTG 369
BSNT_03352___ 370 TGGGGCTCACTGGAAAAACCGATTATGGAAGCTTTTA-----CTGAACTG 414
|||.||....||.||||.|||||.|||||..||||.| .|||
BL02930 370 TGGAGCAGTTTGAAAAAGCCGATCATGGATTCTTTCAGCGCTTTGA---- 415
BSNT_03352___ 415 AAG-CGAGATGTCCAAAAGAATGGAAGCACAAGCT-----TTCA-TGAAA 457
||| ||.||| ||..|||||| .|||| || |||| .||||
BL02930 416 AAGCCGGGAT-TCAGAAAGAA------GACAA-CTTGACATTCAGGGAAA 457
BSNT_03352___ 458 AATGGAATGA--ATTTATCAGTTTATATGACTTGATTTACCCCAGTCTT- 504
|.||||||.| .|||||| .||.|||||...||||||.||.|| |||
BL02930 458 AGTGGAATCATTTTTTATC--CTTGTATGATACGATTTATCCAAG-CTTA 504
BSNT_03352___ 505 ACAATCGATGTAT---CAGAGGATCAGCTTGAAACAGTCGGAAAACATAT 551
||.||||||||.| ||.|| |||.|..|||..|||...||.|||||
BL02930 505 ACGATCGATGTTTCGCCAAAG---CAGTTAAAAAGCGTCTCCAACCATAT 551
BSNT_03352___ 552 ---AGACGTTATTGAGCAA----GAGGAATTTCAGCAAATGACAGAGAGC 594
||.||| |.|| |||| .||.|||||||||||.||.|||
BL02930 552 TGCAGTCGT------GGAAAACGGAGG-CTTCCAGCAAATGACGGAAAGC 594
BSNT_03352___ 595 ACGAAGCTTGAACGGCTTTCCCTTCTTCAGCATGACCTGAAAAATGTGTT 644
|..|||||.|||.||||..|.|||.|..|..|.||..||.||.|||||||
BL02930 595 AGCAAGCTGGAAAGGCTGACGCTTTTGGAAAAAGATTTGGAAGATGTGTT 644
BSNT_03352___ 645 TGA-CAGGGTGGAGGAGGATGATGCCGATCCGTCTTTACTCTGGGTGATG 693
||| || .||.||.||.||||||||.||.||.||..|.||.|||||.||.
BL02930 645 TGATCA-AGTAGAAGAAGATGATGCAGACCCTTCCCTGCTATGGGTCATC 693
BSNT_03352___ 694 ATTACAACCGGCAGTATCATCATTACTGCTCTTACCTATGTCGGTTACAG 743
.|.||.||.||.||.||.|||.|..|..|.||.||.||.|||||||.|||
BL02930 694 CTGACGACGGGAAGCATTATCCTCTCGACGCTGACATACGTCGGTTTCAG 743
BSNT_03352___ 744 AAAGTACAAGGCGGAAAAAAACAAGCTGAAAAAAAG------GGACTACC 787
||||||.||.||.|||.|..|||.||..|.|||||| .||.|..|
BL02930 744 AAAGTATAAAGCCGAAGAGGACAGGCGCAGAAAAAGAGAAAAAGATTGGC 793
BSNT_03352___ 788 CTAAATAA 795
|.||||||
BL02930 794 CGAAATAA 801
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