Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04865 and BL02178
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04865___yusJ.1.5803.seq
# -bsequence dna-align/BL02178___yusJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04865___yusJ-BL02178___yusJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04865___yusJ-BL02178___yusJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04865___yusJ
# 2: BL02178___yusJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1822
# Identity: 1367/1822 (75.0%)
# Similarity: 1367/1822 (75.0%)
# Gaps: 74/1822 ( 4.1%)
# Score: 4998.5
#
#
#=======================================
BSNT_04865___ 1 ATGG--CAAAAAAAACGGCTGGA----GTACAAAAAGGCGGCGGATTTTT 44
|||| ||||.|||| || .|..||||||||||||..|||.|
BL02178___yus 1 ATGGAACAAACAAAA------GATCATATGAAAAAAGGCGGCGCCTTTCT 44
BSNT_04865___ 45 AATCGAGGATGTCACATACGATCAAATGTATACACCGGAGGATTTCACTG 94
.|||||.||.||.||....|||||.||||..||||||||.||||||||.|
BL02178___yus 45 GATCGAAGAGGTAACGGCTGATCAGATGTTCACACCGGAAGATTTCACAG 94
BSNT_04865___ 95 ACGAGCATAAAATGATTGCGAAAACAACGGAGGATTACA---TCGAGCAA 141
|.||.|||||||||||.||.|||||.||.||||||||.| ||| .|
BL02178___yus 95 ATGAACATAAAATGATCGCCAAAACGACTGAGGATTATATTCTCG---GA 141
BSNT_04865___ 142 GATGTTCTCCCTCATATAGATGATATCGAAAACCACCAATTCGAGCATTC 191
|||||.||.||..|.||.||.||.||.|||.|.|||.|.|||||.|||||
BL02178___yus 142 GATGTGCTACCGTACATCGACGAAATTGAAGAGCACAATTTCGATCATTC 191
BSNT_04865___ 192 TGTCAGATTGTTGAAGAAAGCGGGCGAACTAGGGCTGCTTGGCGCCGATG 241
||||||..|..||||.|||||.||||||||.|||||.||.||.||.||.|
BL02178___yus 192 TGTCAGGCTTCTGAAAAAAGCCGGCGAACTCGGGCTTCTCGGAGCTGACG 241
BSNT_04865___ 242 TGCCAGAAGAATACGGCGGGCTCGGCCTAGATAAAATCAGCTCGGCACTC 291
|.||.||.||.||.|||||.|||||.||.|||||||||||||||||..|.
BL02178___yus 242 TTCCTGAGGAGTATGGCGGACTCGGACTTGATAAAATCAGCTCGGCGTTA 291
BSNT_04865___ 292 ATCACTGAGAAATTTTCGCGTGCGGGAAGCTTTTCTCTTTCTTATGGCGC 341
|||||.||.||||||||..|.|||||.||||||||..|.||.||.||.||
BL02178___yus 292 ATCACCGAAAAATTTTCAAGAGCGGGGAGCTTTTCGTTATCGTACGGGGC 341
BSNT_04865___ 342 GCATGTCGGTATCGGTTC-CTTGCCGATCGTCTTTTTCGGATCAGAAGAA 390
|||.||.||.|||||..| ||| ||||||||.|||||||||.|.||.||.
BL02178___yus 342 GCACGTAGGGATCGGCACGCTT-CCGATCGTATTTTTCGGAACCGAGGAG 390
BSNT_04865___ 391 CAAAAGAAAAAATATTTACCTGGACTCGCTT----CAGGCGAAAAGATCG 436
|||||||||||.||| |||...||.||| |.||.||||||.|.|
BL02178___yus 391 CAAAAGAAAAAGTAT----CTGCCGTCCCTTGCAACGGGGGAAAAGTTTG 436
BSNT_04865___ 437 CCGCTTATGCTCTGACTGAGCCTGGCTCTGGGTCTGATGCACTTGGAGCA 486
|.||.||||||.|.||.|||||.|||||.||||||||||||.|.||.|||
BL02178___yus 437 CAGCCTATGCTTTAACAGAGCCGGGCTCCGGGTCTGATGCATTAGGGGCA 486
BSNT_04865___ 487 AAAACAACAGCTGTGCTGAATGAAGCAGGAACCCATTATGTATTAACAGG 536
||||||||.||.||..|||||||.||.||||||||.|||.||||||..||
BL02178___yus 487 AAAACAACGGCCGTTTTGAATGAGGCGGGAACCCACTATATATTAAACGG 536
BSNT_04865___ 537 GGAAAAACAGTGGATTACCAACTCTGCTTTTGCCGATGTATTTGTGGTTT 586
.|||||.||.||||||||.|||||.||.|||||.|||.|.||..|.||.|
BL02178___yus 537 CGAAAAGCAATGGATTACAAACTCAGCCTTTGCTGATATTTTCATCGTCT 586
BSNT_04865___ 587 ACGCCAAGGTAGACGGCGACAAGTTTTCAGCCTTTATTGTAGAAAAAGAG 636
|.||.||..||||||||||..|.||.||.|||||.|||||.||||||||.
BL02178___yus 587 ATGCGAAAATAGACGGCGAACATTTCTCGGCCTTCATTGTGGAAAAAGAC 636
BSNT_04865___ 637 TTCCCGGGTGTCTCCACCGGACCGGAAGAAAAGAAAATGGGAATCAAGGG 686
|.|.|.||.||||||||.||.||.|||||.||.||||||||.|||||.||
BL02178___yus 637 TACTCAGGCGTCTCCACAGGGCCTGAAGAGAAAAAAATGGGCATCAAAGG 686
BSNT_04865___ 687 ATCATCGACAAGAACCCTCATTCTGGATCAAGCTGAAGTGCCAACGGAAA 736
.||.|||||..|.||.|||||..|.||.||.|.|.||||.||||..||||
BL02178___yus 687 CTCTTCGACCCGCACGCTCATCTTAGACCAGGTTCAAGTTCCAAAAGAAA 736
BSNT_04865___ 737 ACCTGCTCGGAGAAATCGGCAAAGGGCATGTCATTGCCTTTAATATTTTA 786
||||..|.||.|||...||.||||||||||||||.|||||.|||||||||
BL02178___yus 737 ACCTATTAGGTGAACCGGGAAAAGGGCATGTCATCGCCTTCAATATTTTA 786
BSNT_04865___ 787 AACATCGGCCGTTACAAACTGGCGGTTGGCACAATCGGCGCATCTAAACG 836
||.|||||.||.||.||.||.||.||.||.|||||||||||.||.|||||
BL02178___yus 787 AATATCGGACGCTATAAGCTCGCTGTCGGGACAATCGGCGCTTCGAAACG 836
BSNT_04865___ 837 CGTCATCGAGCTGTCTGCGTCATACGCAAATCAGCGCCGCCAATTTAAAA 886
.||||||||||||||.||.||||||||.||||||||||..||.|||||.|
BL02178___yus 837 GGTCATCGAGCTGTCCGCTTCATACGCCAATCAGCGCCAGCAGTTTAAGA 886
BSNT_04865___ 887 CGCCGATTGCTGGTTT----TTCATTGACACAGGAAAAAATCGGGACAAT 932
|.||||||.|....|| ||.|||| .|||||||||||..|..||
BL02178___yus 887 CACCGATTTCAAAGTTCAGCTTAATTG----GGGAAAAAATCGCCAACAT 932
BSNT_04865___ 933 GGC-CTCAAGGCTGTATGCGATGGAAAGCTCTGTATACAGAACCGTCGGG 981
|.| .|||| .||.||||||||||||||||||||.||..|.||.||||||
BL02178___yus 933 GTCAGTCAA-ACTTTATGCGATGGAAAGCTCTGTTTATCGTACGGTCGGG 981
BSNT_04865___ 982 CTGTTTGAAGACAATATGAGCCAGTTCACGGCG--GAAGATCTCAAGGAC 1029
||||||||||||||.|||.||...||.| ||| |||||.|..||.|||
BL02178___yus 982 CTGTTTGAAGACAAAATGGGCACCTTGA--GCGAAGAAGAGCAAAAAGAC 1029
BSNT_04865___ 1030 GGCCGGCAAATTGCCAAATCGATTGCGGAATACGCTATCGAATGCTCTCT 1079
||.||.||..||||.||||||||.||.|||||.||.|||||||||||.||
BL02178___yus 1030 GGGCGCCAGGTTGCGAAATCGATCGCAGAATATGCAATCGAATGCTCCCT 1079
BSNT_04865___ 1080 GAATAAAGTATTCGGCTCTGAAACGCTTGATTATATCGTTGATGAAGGCG 1129
.||.|||||||||||.||||||||||||||||||||||||||||||||||
BL02178___yus 1080 TAACAAAGTATTCGGATCTGAAACGCTTGATTATATCGTTGATGAAGGCG 1129
BSNT_04865___ 1130 TGCAGATTCATGGAGGCTACGGCTTTATGCAGGAGTACGAAGTAGAAAGG 1179
|.||.||.||.||.||.|||||.||.||||||||.||||||||.||..||
BL02178___yus 1130 TTCAAATCCACGGCGGTTACGGATTCATGCAGGAATACGAAGTGGAGCGG 1179
BSNT_04865___ 1180 GCCTATAGGGATTCAAGGATCAATCGGATTTTTGAAGGCACAAACGAAAT 1229
||.||..|.||||||.||||.||.||||||||||||||||||||||||||
BL02178___yus 1180 GCTTACCGCGATTCACGGATTAACCGGATTTTTGAAGGCACAAACGAAAT 1229
BSNT_04865___ 1230 CAACCGGTTAATCGTGCCAAGCACCTTCCTGAAAAAAGCGCTTAAAGGCG 1279
|||||||.|.|||||.||..||||||.|.|||||||||||.|.|||||||
BL02178___yus 1230 CAACCGGCTCATCGTCCCGGGCACCTACATGAAAAAAGCGATGAAAGGCG 1279
BSNT_04865___ 1280 AGCTGTCTTTATTCGAAAAAGCGCAGTCGCTGCAGGAAGAACTCATGATG 1329
||||..||.|.||.||.|||||..||.|.||.|||||||||||.||||||
BL02178___yus 1280 AGCTTCCTCTGTTTGAGAAAGCAAAGGCTCTTCAGGAAGAACTGATGATG 1329
BSNT_04865___ 1330 CTTATGCCTGAAGAGCCTGGAAGCGGCGTCTTAGAGCAGGAGAAATATAT 1379
||.|||||||||||.||.||...||||||..|.||.|||||.||.|||.|
BL02178___yus 1330 CTCATGCCTGAAGAACCAGGTGACGGCGTTCTCGAACAGGAAAAGTATCT 1379
BSNT_04865___ 1380 CGTCAAGCAA-GCCAAAAAAATTGCGTTGTTTGCT-GCCGGCCTAGCCGC 1427
|...||.|| ||||||||.|..|||.| ..||.| ||.||.||.|||||
BL02178___yus 1380 -GCTGAGAAACGCCAAAAAGACCGCGCT-CATGATCGCGGGACTCGCCGC 1427
BSNT_04865___ 1428 GCAAAAATACGGAAAAGCGATCGATCGTGAGCAAGAAATTCTCGTGAACG 1477
|||||||||||||||||||.||||.|..|||||.|||||.|||||.|||.
BL02178___yus 1428 GCAAAAATACGGAAAAGCGCTCGACCAGGAGCAGGAAATCCTCGTCAACA 1477
BSNT_04865___ 1478 TAGCGGATATCGTCAGCAATGTATACGCAATGGAATCAGC-------CGT 1520
|.||.||.||.||||||.|..|.||||||||||||.|||| |||
BL02178___yus 1478 TCGCCGACATTGTCAGCCAGATCTACGCAATGGAAGCAGCTATTTTACGT 1527
BSNT_04865___ 1521 GCTCAGAACGGAAAAGGCCATTGCCGCACAA--GGCGCTGA-AAAAGCAG 1567
||.|||||.||||| |||..||| ||||..|| ||||.| |
BL02178___yus 1528 -------ACTGAAAAAGCCAT--CCGGGCAACCGGCGAAGACAAAAAC-G 1567
BSNT_04865___ 1568 CGCAAAAGGTGCTGTACACAGAAATTTTCGTTCAAGAGGCCTTTAACGAA 1617
|.||.||..|.||.||.||..|||||||.|..||.||.||||||.|.|||
BL02178___yus 1568 CACAGAAAATTCTTTATACGCAAATTTTTGCGCAGGAAGCCTTTCAGGAA 1617
BSNT_04865___ 1618 ATTG-AAGCGCATGCGAAGGAATCCCTTATCGCAATGGAAGAAGGAGATT 1666
|||| |||| |||||.||.|||||.||.||.||.||||||..|||.||||
BL02178___yus 1618 ATTGAAAGC-CATGCCAAAGAATCGCTCATTGCGATGGAATCAGGCGATT 1666
BSNT_04865___ 1667 CACTCCGCATGATGCTTTCCGCTCTGCGCAAGCTGACACGCGTAACGCCT 1716
|.||.|||||||||||.|||||.||||||||..||||.|||.|.||||||
BL02178___yus 1667 CGCTGCGCATGATGCTGTCCGCGCTGCGCAAATTGACGCGCTTTACGCCT 1716
BSNT_04865___ 1717 AAAAATGTGATTCAGAAAAAACGCGAGGCGGC---GGCAGGCATTTTTGA 1763
...||.||||||.|||||||.|||.||||.|| ||.|| |.|||||
BL02178___yus 1717 GTCAACGTGATTGAGAAAAAGCGCCAGGCAGCCAAGGGAG---TCTTTGA 1763
BSNT_04865___ 1764 GGCTGAGAAATATACTGTCTGA 1785
.|||||||||||||..||.|.|
BL02178___yus 1764 AGCTGAGAAATATATCGTTTAA 1785
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