Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01778 and BL01092
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01778___sipV.1.5803.seq
# -bsequence dna-align/BL01092___sipV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01778___sipV-BL01092___sipV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01778___sipV-BL01092___sipV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01778___sipV
# 2: BL01092___sipV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 547
# Identity: 360/547 (65.8%)
# Similarity: 360/547 (65.8%)
# Gaps: 68/547 (12.4%)
# Score: 1122.5
#
#
#=======================================
BSNT_01778___ 1 ATGAAAAAACGGTTTTGGTTTCTTGCCGGTGTAGTGTCCGTTGTTCTCGC 50
.|||||||.||.||||.|.|..|.|||||.|||.|| .||||..|||.
BL01092___sip 1 TTGAAAAAGCGTTTTTTGGTCATAGCCGGGGTACTG---CTTGTCATCGT 47
BSNT_01778___ 51 C------ATTCAGGTTAAAAATGCTGTCTTTATTGATTACAAGGTAGAAG 94
| ||||||||.||||||||.||.||.|||||.||.||.|||||||
BL01092___sip 48 CGTCGGGATTCAGGTCAAAAATGCCGTTTTCATTGAATATAAAGTAGAAG 97
BSNT_01778___ 95 GCGTCAGTATGAACCCGACCTTCCAGGAAGGAAACGAATTGTTGGTCAAT 144
|||||||.|||||.||||||||.|||||.||.|||||..|.|||.||||.
BL01092___sip 98 GCGTCAGCATGAATCCGACCTTTCAGGAGGGCAACGAGCTTTTGATCAAC 147
BSNT_01778___ 145 AAATTTTCGCATCGATTTAAAACCATCCATCGTTTTGACATCGTCCTTTT 194
|..||..|.||.||.||||||||.|||...||.|||||||||||.||.||
BL01092___sip 148 AGGTTCGCCCACCGCTTTAAAACGATCAGCCGATTTGACATCGTGCTGTT 197
BSNT_01778___ 195 TAAAGGCCCTGATCATAAAG---TGCTGATTAAACGGGTAATC-GGCTTG 240
||||||.|||| |.|||| |..|.||||||.||||.||| |||||
BL01092___sip 198 TAAAGGACCTG---ACAAAGATATATTCATTAAAAGGGTGATCGGGCTT- 243
BSNT_01778___ 241 CCCGGTGAAACGATCAAATATAAAGATGATCAGCTGTATGTGAACG--GA 288
||.||.|||||..|||..|||.|||||||||||||||||.|.|||| ||
BL01092___sip 244 CCGGGCGAAACCCTCAGGTATGAAGATGATCAGCTGTATATCAACGAAGA 293
BSNT_01778___ 289 AAGCAGGTTGCTGAGCCATTTTTGAAGCATTTGAAATCTGTTTCTGCCGG 338
|| ||.|....|||||.|.|.||.|..|.||.||..|.||..|.|||||
BL01092___sip 294 AA--AGATCAAAGAGCCTTATCTGGACGACTTAAAGGCCGTCACCGCCGG 341
BSNT_01778___ 339 CAGCCATGTAACGGGTGATTTTTCTTTGAAAGATGTGACGGGA-ACAAGC 387
..|..|..|.||.||.||||||.|..||.|.||.|||||.||| |..||
BL01092___sip 342 AGGGGACTTGACAGGGGATTTTACACTGCAGGAAGTGACCGGAGAGGAG- 390
BSNT_01778___ 388 AAGGTGCCGAAAGGAAAA----TATTTTGTCGTTGGAGATAATCGCATAT 433
|||||||| .||||| ||.||.|||.|.||.||.||.||.||..
BL01092___sip 391 AAGGTGCC----TGAAAACGAGTACTTCGTCCTCGGGGACAACCGGATCC 436
BSNT_01778___ 434 ACAGCTTCGACAGCCGGCATTTTGG-------TCCGATAAGAGAAAAAAA 476
|||||||.||||||||.|||||.|| || ||||....|
BL01092___sip 437 ACAGCTTTGACAGCCGCCATTTCGGCTTTGTTTC-------AGAACGGGA 479
BSNT_01778___ 477 TATTGTCGG---TGTGATTTCTGA------TGCCGAATAA------- 507
.||.||||| ||||| |.|| || ||||
BL01092___sip 480 CATCGTCGGGATTGTGA---CGGAAAGAATTG----ATAAGAAGTGA 519
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