Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01073 and BL00488
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:35
# Commandline: needle
# -asequence dna-align/BSNT_01073___ydjN.1.5803.seq
# -bsequence dna-align/BL00488___ydjN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01073___ydjN-BL00488___ydjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01073___ydjN-BL00488___ydjN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01073___ydjN
# 2: BL00488___ydjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 672/1165 (57.7%)
# Similarity: 672/1165 (57.7%)
# Gaps: 263/1165 (22.6%)
# Score: 1664.0
#
#
#=======================================
BSNT_01073___ 1 ATGAAAAAAAGAATCA--TATTATTATT---AGCAGTGATAATAGCGGCA 45
||| |||||||..||| |.|| ||.|| .|||||.||..||||.|||
BL00488___ydj 1 ATG-AAAAAAGTTTCAGTTGTT-TTGTTGGCGGCAGTCATTTTAGCCGCA 48
BSNT_01073___ 46 GCTGCCGCGGGGGTTGCGTTTTATGTTGCAAAGGATAAAGGCCATGAGAA 95
|..|| || |||| ||||.|
BL00488___ydj 49 GGCGC-----------------AT-TTGC----------GGCCGT----- 65
BSNT_01073___ 96 GGCTGCTGATGTTTCAGTCAATACCG---AAAGCGGTG------ATGAG- 135
|.|.|.|||| ||| ||| |||||||.| |.|||
BL00488___ydj 66 -----CCGCTATTTC-GTC----CCGGAAAAAGCGGAGCCGGCAAAGAGC 105
BSNT_01073___ 136 ------------CTGCTGGTTTCAATTACAGATACGGATCTGCTGACAAA 173
|||||.||.||.||.||.|||..|.|.|||.||||...
BL00488___ydj 106 GGCGGTTCAGACCTGCTTGTATCGATAACCGATCAGAAGCTGATGACCGC 155
BSNT_01073___ 174 GTATTATGAAAATGACAAGGTGATCCATGAGGAGAAGCTGACCAGCTATC 223
.||.|||||||||.|.||...|.|..||||.||.|||.||||....||||
BL00488___ydj 156 TTACTATGAAAATCAAAATAAGCTGTATGAAGAAAAGATGACGGATTATC 205
BSNT_01073___ 224 CGGCATTTGCCTTGGATC---AAAAACAGCAGGTGCTCTATTATACGGGC 270
||||..|.||.||.||.| |||||| |.| |.||.||.|||||...|
BL00488___ydj 206 CGGCTATGGCATTAGACCGGAAAAAAC-GAA--TTCTTTACTATACAAAC 252
BSNT_01073___ 271 AATAATGAACAG-AATGAAATGAGGCTTT---TTAAACTGGATCTAAAGT 316
|...|| ||||| |||| |||.||.|| |.|..||||||.||.|||
BL00488___ydj 253 ACCGAT-AACAGCAATG---TGAAGCATTTGATCAGGCTGGATTTACAGT 298
BSNT_01073___ 317 CTAATAAAAAGACGGTGCTTTATAAAGGCGCGGAGAGTGCGGACAGTTTG 366
|....|||||.||....||.|||..|||.|..||...||..|||.|..|.
BL00488___ydj 299 CGGGCAAAAAAACAACCCTATATTCAGGAGATGAATATGTCGACGGGCTC 348
BSNT_01073___ 367 TTTTTATCAAAGGACCGTTCAACCATCTATTTCCGC-TTAGGAAAAT--- 412
..||||||...||||.||||.| |.||.|| | |.|| ||
BL00488___ydj 349 AGTTTATCGGCGGACGGTTCGA--AGCTGTT----CATGAG----ATACA 388
BSNT_01073___ 413 ------CGGACGAAAGCAATTTTCGGATCGCCGCTTTTGATCTGAAGACG 456
||||.||.||.|||||||...|.||..|.|||||| |.||.||
BL00488___ydj 389 ACCTTGCGGAGGAGAGGAATTTTCACCTTGCTTCCTTTGAT-TTAAAAC- 436
BSNT_01073___ 457 AAAAAG--------TATAAAAATCTTTATCC-----TGCCGCTAATGATC 493
||||| |.|.| |.||||| || ||..|..
BL00488___ydj 437 -AAAAGGCGTTTCATGTCA-----TCTATCCATCGTTG-----AAAAACA 475
BSNT_01073___ 494 AGGATGACACCGTCAGCAGCTTCTTT---TATAACCAA----AAAAACGA 536
||||.||.||.|| |||||.||.| ||.|||.|| |.||.|.|
BL00488___ydj 476 AGGACGAAACTGT---CAGCTACTATCAGTACAACAAAGCTGACAATCAA 522
BSNT_01073___ 537 TTCATTTGCATTGCTTCATTATTC--TGTAGAAGAAGACTA-CAAGAAAA 583
|||.|| .||||.|||||||| ||.|| |||||||| ||| ||||
BL00488___ydj 523 TTCGTT----ATGCTGCATTATTCATTGAAG--GAAGACTATCAA-AAAA 565
BSNT_01073___ 584 CAGATGAAGCAAACGAAAAGGGCAT--CGACCCTGAACCGACAACGAT-- 629
|||||||.||.|||.|.||.|||.| || ||.||||||||.|..||
BL00488___ydj 566 CAGATGATGCGAACAACAAAGGCGTGCCG--CCCGAACCGACGAATATGA 613
BSNT_01073___ 630 TCATTT----------TGCGGAAGGCCGTCAACATAAATTTAA--TGAGC 667
.||||| ||.|.|||..||.||| || ||||
BL00488___ydj 614 ACATTTCCATGGCGGGTGTGAAAGATCGGCAA---------AAGGTGAG- 653
BSNT_01073___ 668 TGAAA----AGCCTGAACCAATTTATCAGCGATATTGCTGTTT---CTGA 710
|| ||| || |||||||||..||..|.||..||| |.||
BL00488___ydj 654 ---AACGATAGC---AA--AATTTATCAATGACGTGGCAATTTCGCCGGA 695
BSNT_01073___ 711 TGATGATAAACGTATTTTATTCACATCAT------ATACGCAGAAAGGAA 754
|| ||.||||| |||.|.||.|||..|| ||...|||||.|
BL00488___ydj 696 TG--GAAAAACG-ATTGTCTTTACAGAATCGGCTGATGATCAGAAGG--- 739
BSNT_01073___ 755 CGGAGCAAACCGCTTCTATTCAGATGCTCAATGCGGATACGAAAAAGTAT 804
||.|| |||.| |||| .||||.||.||||||||.||
BL00488___ydj 740 ----------CGATT-TATGC-GATG---GATGCCGAAACGAAAAAATA- 773
BSNT_01073___ 805 GAAAGC-ATCATCTCAAATCAAAAATCATTTAAGCT-----GTTAATTGA 848
.||||| |||||.|||.||||..|..||||| | ||..|||.|
BL00488___ydj 774 CAAAGCGATCATTTCAGATCAGCAGGCATTT----TCATTGGTCGATTCA 819
BSNT_01073___ 849 CGCACAGCCTCAGTTTTCTAAGGATGGGAAGAACATTTATTTTCTTGCCG 898
||||||||.||.||.||.||.||.|||||.||..||||.|||||.||.|
BL00488___ydj 820 -GCACAGCCGCAATTCTCGAAAGACGGGAAAAAGCTTTACTTTCTCGCTG 868
BSNT_01073___ 899 AAGCCAAGGGGGCTAAAAAGC-TGAAGGACGAAACAGGGCGTGAAGCTAA 947
||||.||.|..||.||...|| |||| ||.|||||.|||.|.|||||.|.
BL00488___ydj 869 AAGCAAAAGATGCGAAGCTGCTTGAA-GATGAAACGGGGAGCGAAGCAAG 917
BSNT_01073___ 948 GGTGCGGACGATTTATTCCTATAGCCTTGAAA---ATAAGACCTTCAAAA 994
||||.|.|||||.|||||.|| |||.| |||.| ||||
BL00488___ydj 918 GGTGAGAACGATCTATTCGTA------TGATATGGATACG------AAAA 955
BSNT_01073___ 995 AAGT---------ATGGGAAAATCCGAACGGCATCATCAACAGCTTTTCT 1035
|||| .||||||||..|.|||||.||||||||||.||||.|.
BL00488___ydj 956 AAGTGAGCAAAGCCTGGGAAAAAACAAACGGGATCATCAACACCTTTACG 1005
BSNT_01073___ 1036 GTGATTAACTAA--- 1047
||.|||.||.||
BL00488___ydj 1006 GTCATTGACGAATAA 1020
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