Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06280 and BL00103

See Amino acid alignment / Visit BSNT_06280 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_06280___spo0J.1.5803.seq
#    -bsequence dna-align/BL00103___spo0J.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06280___spo0J-BL00103___spo0J.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06280___spo0J-BL00103___spo0J.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06280___spo0J
# 2: BL00103___spo0J
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     625/865 (72.3%)
# Similarity:   625/865 (72.3%)
# Gaps:          32/865 ( 3.7%)
# Score: 2163.0
# 
#
#=======================================

BSNT_06280___      1 ATGGCTAAAGGCCTTGGAAAAGGGATTAATGCGTTATTT---AATCAGGT     47
                     |||.|||||||.||.|||||||||||||||||.||.|||   |||   ||
BL00103___spo      1 ATGCCTAAAGGTCTCGGAAAAGGGATTAATGCATTGTTTTCAAAT---GT     47

BSNT_06280___     48 AGATTTGTCTGAAGAGACAGTTGAAGAAATTAA-----AATTGCCGATTT     92
                     .|||||.||.|||||.||.|||||.|||||.||     ||     ||.||
BL00103___spo     48 TGATTTATCCGAAGAAACGGTTGAGGAAATCAAGCTGCAA-----GACTT     92

BSNT_06280___     93 ACGCCCTAATCCTTATCAGCCAAGAAAACAC-TTTGATGACGAGGCATTA    141
                     .||.||.||.|||||||||||||||||| || |||||||||.|..|.|||
BL00103___spo     93 GCGGCCCAACCCTTATCAGCCAAGAAAA-ACGTTTGATGACCAATCGTTA    141

BSNT_06280___    142 GCTGAACTAAAAGAATCTGTGCTGCAGCATGGCATTCTTCAGCCGCTTAT    191
                     ...||..|.||.||.||..|..|||||||.||..||.|.|||||..|.||
BL00103___spo    142 AAAGATTTGAAGGAGTCCATTTTGCAGCACGGTGTTTTGCAGCCCATCAT    191

BSNT_06280___    192 CGTCAGAAAATCTTTAAAAGGCTATGATATTGTTGCGGGTGAACGGCGTT    241
                     |||||||||.||..|.|||||||||||.|||||.||.||.|||||.||||
BL00103___spo    192 CGTCAGAAAGTCAATTAAAGGCTATGACATTGTGGCCGGAGAACGCCGTT    241

BSNT_06280___    242 TTCGAGCGGC---AAAGCTGGCAGGTTTAGATACAGTTCCGGCCATTGTC    288
                     |.||.||.||   |||   |||.||.||.||.||..||||.||.|||||.
BL00103___spo    242 TCCGGGCTGCTGAAAA---GGCCGGATTGGAAACCATTCCTGCGATTGTG    288

BSNT_06280___    289 CGTGAATTATCAGAGGCGTTAATGAGGGAAATTGCTTTATTAGAAAATCT    338
                     ||.||..|.||.||..|..|.||||.|||.|||||..||||.||||||||
BL00103___spo    289 CGCGAGCTGTCGGAATCCCTGATGATGGAGATTGCCCTATTGGAAAATCT    338

BSNT_06280___    339 TCAGCGTGAAGATTTATCTCCGCTTGAAGAGGCTCAGGCATATGACTCCT    388
                     |||.||.|||||..|.||||||||||||||.||..|.||.|||||.||.|
BL00103___spo    339 TCAACGAGAAGACCTGTCTCCGCTTGAAGAAGCAAAAGCCTATGAATCTT    388

BSNT_06280___    389 TGTTGAAACACTTAGATCTCACACAAGAGCAGCTTGCCAAACGTCTTGGG    438
                     ||.|.|||||..|.|||.|.||.||.||.|||||.||.|||.|.|||||.
BL00103___spo    389 TGCTCAAACATCTCGATATGACCCAGGAACAGCTGGCGAAAAGGCTTGGA    438

BSNT_06280___    439 AAAAGCAGACCGCATATTGCGAATCATTTAAGACTGCTGACACTGCCAGA    488
                     ||||||||.||.||.||.||.||.||.||..|.|||||||||||.||.||
BL00103___spo    439 AAAAGCAGGCCTCACATCGCCAACCACTTGCGGCTGCTGACACTTCCTGA    488

BSNT_06280___    489 AAATATTCAGCAGCTTATTGCCGAAGGTACGCTTTCTATGGGACATGGAC    538
                     |.|..||||..||.|.||.|.|.|.||.|||.|.||.|||||.|||||.|
BL00103___spo    489 AGACGTTCAAAAGTTAATCGACAACGGCACGTTATCGATGGGCCATGGCC    538

BSNT_06280___    539 GCACGCTTCTTGGCTTAAAAAACAAAAATAAGCTTGAACCGCTGGTACAA    588
                     |.||..|.|||||.||.||||||||.||.||||||||.|||||.||.|||
BL00103___spo    539 GAACATTGCTTGGATTGAAAAACAAGAAAAAGCTTGAGCCGCTTGTTCAA    588

BSNT_06280___    589 AAAGTGATTGCGGAGCAGCTCAATGTTCGCCAGCTTGAGCAGCTGATTCA    638
                     ||.||..|..|.||.|||.|.||.||.||||||.|.||..||.|.|||||
BL00103___spo    589 AAGGTCGTGTCCGAACAGTTGAACGTCCGCCAGTTGGAAAAGTTAATTCA    638

BSNT_06280___    639 GCAGTTGAA-TCAGAATGTTCCACGTGAAACAAAGAA---AAAAGAACCT    684
                     .|||||||| .|.| ||||||||||||||||||||||   .|||.||   
BL00103___spo    639 ACAGTTGAACGCTG-ATGTTCCACGTGAAACAAAGAAGCCGAAACAA---    684

BSNT_06280___    685 GTGAAAGATGCGGTTCTAAAAGAGCGAGAATCCTATCTCCAAAATTATTT    734
                     ||.||||||||.||..|.||.||.||.|||||.|||.|.|.|||.|||||
BL00103___spo    685 GTCAAAGATGCAGTGATCAAGGAACGGGAATCGTATTTGCGAAACTATTT    734

BSNT_06280___    735 TGGAACAACAGTTAATATTAAAAGACAGAAGAAAAAAGGCAAAATCGAAA    784
                     |||||||.|.||.|..|||||||..||.|||||||||||||..|||||||
BL00103___spo    735 TGGAACACCGGTGACCATTAAAAAGCAAAAGAAAAAAGGCAGGATCGAAA    784

BSNT_06280___    785 TTGAATTTTTCTCTAATGAAGACCTTGACCGGATTTTAGAGCTTTTGTCT    834
                     |.|||||.|.|||.|||||||||.|.||.||.|||.|.||..|.|||.||
BL00103___spo    785 TCGAATTCTACTCAAATGAAGACTTGGAGCGTATTCTCGAATTATTGGCT    834

BSNT_06280___    835 GAACGAGAATCATAA    849
                     .||..|||..|||||
BL00103___spo    835 CAAGAAGACGCATAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06280 and BL00103

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
