Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04404 and BL00019
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04404___ytaP.1.5803.seq
# -bsequence dna-align/BL00019___ytaP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04404___ytaP-BL00019___ytaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04404___ytaP-BL00019___ytaP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04404___ytaP
# 2: BL00019___ytaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 959
# Identity: 617/959 (64.3%)
# Similarity: 617/959 (64.3%)
# Gaps: 130/959 (13.6%)
# Score: 1811.0
#
#
#=======================================
BSNT_04404___ 1 ATGAG-AGCCGAAAGAAGAAAGCAACTGTTTC-GATTGCTTGGTGATTTG 48
|||.| || .||||| |||| .|.||||.||.||||||
BL00019___yta 1 ATGCGCAG-------------TCAACT-TTTCAAACTGCTCGGCGATTTG 36
BSNT_04404___ 49 CCTGATCGGAGGCCAATCAGTGTTGAGA-CATTACGTATTGAAGAAAGAG 97
||.| |||....||.||.||.||.|| ||.| |.|| |||..|
BL00019___yta 37 CCGG---GGAAAAAAAGCATTGATGCGAGCACT-CTTA------AAATCG 76
BSNT_04404___ 98 AAGAAAA---------TATCGTTGAAACGCTCCTGCTCGATTTAAATGGA 138
||||||| |||..|.||||||||..||||.||||||||.|||
BL00019___yta 77 AAGAAAAGTCATCTTTTATTCTCGAAACGCTTTTGCTTGATTTAAACGGA 126
BSNT_04404___ 139 CATGAAAAGGTGCCCGCTTATTTTGTGAAGCCGAAGAAAACAGAAGGAC- 187
..||||..||||||.||.|||||||..||.||| |||||||.|.||
BL00019___yta 127 ATTGAAGCGGTGCCGGCCTATTTTGCAAAACCG----AAACAGATGAACG 172
BSNT_04404___ 188 ---CGTGCCCAGCCG-----TATTGTTTCAGCATTCGCATGGGGGCCAGT 229
.|.|.||.|||| ||.||| |||||.||.||.||.|..|
BL00019___yta 173 GCAAGCGGCCGGCCGTGCTTTACTGT-----CATTCACACGGAGGGCGCT 217
BSNT_04404___ 230 ATGATAGGGGAAA-AAGTGAGCTGATTGAGGGAGCGGATTATTTGAAAAC 278
|.||.|||||||| .|| ||||||.||||.||||||||.||.|||.||.|
BL00019___yta 218 ACGAAAGGGGAAAGGAG-GAGCTGGTTGAAGGAGCGGAGTACTTGCAAGC 266
BSNT_04404___ 279 GCCTTCTTTTTCTGATGA-------GCTTACTTCACTCGGATACGGCGTT 321
|||..|.||..|.||.|| |||| |.||||.|..|||.
BL00019___yta 267 GCCGCCGTTCGCCGAGGAATTGACGGCTT-------TGGGATTCTCCGTG 309
BSNT_04404___ 322 CTTGCGATTGATCATTGGGGATTTGGAGATCGGCGGGGAAAAGCGGAAAG 371
|||||||||||||||||||..||.|||||..|||||||.|||.||||.||
BL00019___yta 310 CTTGCGATTGATCATTGGGCTTTCGGAGACAGGCGGGGCAAAACGGAGAG 359
BSNT_04404___ 372 CGAGATATTTAAAGAAATGCTTCTCAC----CGGAAAAGTGATGTGGGGG 417
.|||||||||||||||||||||...|| ||| |||||||||||.
BL00019___yta 360 TGAGATATTTAAAGAAATGCTTTGGACAGGGCGG----GTGATGTGGGGA 405
BSNT_04404___ 418 ATGATGATTTATGACAGTTTAAGTGCGTTAGACTATATGCAGTCACGCTC 467
||||||.|||..|||||..|.||.||..|.||.|||.||.| ..
BL00019___yta 406 ATGATGGTTTTCGACAGCATCAGAGCCATCGATTATCTGAA-------AA 448
BSNT_04404___ 468 TGATGTTCAGCCTGACA------------GGATCGGAACCATCGGCATGT 505
|||.| .|| |||| |.||||...|..|||||||||
BL00019___yta 449 TGAGG--GAG---GACATAGACGAAAGCCGCATCGCTTCACTCGGCATGT 493
BSNT_04404___ 506 CTATGGGAGGTTTGATGGCGTGGTGGACAGCGGCGCTCGATGACCGGATT 555
|.|||||||||.|||||||.||||||||.||.||..|.|||||.|||.|.
BL00019___yta 494 CGATGGGAGGTCTGATGGCCTGGTGGACCGCTGCATTGGATGAGCGGGTC 543
BSNT_04404___ 556 AAGGTGTGTGTGGATTTGTGCAGC-CAGGTGGATCATC---ACGTGCTGA 601
|..||.||.||.|||.|.||| || |||||||| ||.| ||.| |.|
BL00019___yta 544 AGCGTATGCGTTGATATATGC-GCTCAGGTGGA-CAGCGAAACAT--TAA 589
BSNT_04404___ 602 TCAAAACACAGAATCTTGACAGGCACGGCTTTTATTATTACGTCCCATCG 651
||||.||.||||||.|.|||.|.|||....|.||||.|||.||.|||..|
BL00019___yta 590 TCAAGACGCAGAATTTGGACCGCCACAATCTCTATTCTTATGTTCCAGGG 639
BSNT_04404___ 652 CTTG-CAAAGCATTTTT---CCGCATCGGAGATCCAAAGCCTGATCGCGC 697
||.| |||| ||.|||| |||| || |.|||.|||||.|||||||.|
BL00019___yta 640 CTGGTCAAA-CACTTTTCAACCGC-TC--AAATCGAAAGCTTGATCGCTC 685
BSNT_04404___ 698 CGCGCCCGCACCTTAGTCTTGTTGGTGTACACGATCGGTTA-----ACGC 742
|..|.||.||..|.||.||.||.|| |..|| |.|.|| ||||
BL00019___yta 686 CAAGGCCTCATTTAAGCCTGGTCGG---AACCG--CAGATAAACTGACGC 730
BSNT_04404___ 743 CGGCTGAGGGCGTGGACAAAATCGAAAAAGAATTGACAGCTGTCTATGCT 792
|||.|.|.||..|.||||..||.|||.||.|..||.|.|.|||.|||...
BL00019___yta 731 CGGTTCAAGGGATTGACATTATTGAAGAAAAGCTGTCCGATGTGTATATA 780
BSNT_04404___ 793 GGACAGGGAGCTGCTGATTGCTACCGAGTGGTCCGTTCTGCTTCGGGACA 842
|.|.|.||.||.|.|||..||||...||||.|.||||||..|||.||.||
BL00019___yta 781 GAAAAAGGCGCAGGTGAACGCTATGAAGTGTTTCGTTCTCATTCAGGGCA 830
BSNT_04404___ 843 TTTCGAAACAGCAGTTATGAGGCATGAAGCTGTCCGGTTT-TTGCAAAAG 891
..||||.|||||.|..|||||||||.||||.|| |||||| ||..|||..
BL00019___yta 831 CCTCGAGACAGCCGGAATGAGGCATAAAGCGGT-CGGTTTCTTAAAAACA 879
BSNT_04404___ 892 TGGCTGTGA 900
|||||||.|
BL00019___yta 880 TGGCTGTAA 888
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