Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04810 and RBAM_037030

See DNA alignment / Visit BSNT_04810 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:20
# Commandline: needle
#    -asequence pep-align/BSNT_04810___pucD.1.9828.seq
#    -bsequence pep-align/RBAM_037030.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04810___pucD-RBAM_037030.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04810___pucD-RBAM_037030.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04810___pucD
# 2: RBAM_037030
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     210/812 (25.9%)
# Similarity:   350/812 (43.1%)
# Gaps:         103/812 (12.7%)
# Score: 645.0
# 
#
#=======================================

BSNT_04810___      1 -MIINKPSRVRPDGRDKVTGELKYMTDLSFPGMLYGKVLRSAYPHAEIVS     49
                      ..|.| |.:|.:...||||:.||..|....|.|:.|:|.|.|.||:|||
RBAM_037030        1 MEYIGK-SVIRKEALGKVTGKAKYTDDFQETGTLHAKMLVSPYAHADIVS     49

BSNT_04810___     50 VCTIKAEKMEGVQAVVTHKDVPGLNRFGIVIPDQPVLCEDRVRYVGDAIA     99
                     :...:|.|:.||:|::..:..|   ..|..|.|:..:...||||.|:.:|
RBAM_037030       50 MDFSEAWKIPGVRAILGDEPFP---LAGEEIKDRSPIAYKRVRYHGEPVA     96

BSNT_04810___    100 AVAAETEEIAEAALELIRVEYKELEVMDSPEKAIRPNAQRLHEDG-----    144
                     .|.||....|:.|.:.|:|.||.|.|::||.:|.:.:|..:||..     
RBAM_037030       97 VVVAENPITAKKAADAIKVSYKPLPVVNSPREAFQKDAPLVHEHADRYEK    146

BSNT_04810___    145 ----------NILHRAFFSNGDVEEGFQASDTVLEETYELPRQMHTYMET    184
                               ||.:......|::|:||:.||...|.........|..|||
RBAM_037030      147 TKGVFPVPKTNIANLDKVRKGNIEDGFRESDVTAEFQISFNPSDHAAMET    196

BSNT_04810___    185 EGGVAVPEDDGGFTMYAGTQHGYKDRFQLARIFDIPEEKIRIVSSPM-GG    233
                     ...:.....|....:...:|..:..:..:...|.|...|: ||.:|: ||
RBAM_037030      197 RCSIVEIRADEEIIITTSSQAPFAIKKLMQWYFGIEPGKV-IVKTPLVGG    245

BSNT_04810___    234 SFGGKDELNIQPYAALLS-LKSGRPVKIHQTRKESVRSGIKRHPMKITIK    282
                     ::|||..:.::..|.|.| ...|||||:..||:|.:.:......:...:|
RBAM_037030      246 AYGGKAAVQLEVIAYLASKAVGGRPVKLFNTREEDLITSPVHIGLDAIVK    295

BSNT_04810___    283 TGADHSGNLLAHDVKIVADTGAYATLGPAVLDFSVEHAAGPYRIPNIRTE    332
                     .||...|.|.|.|::::.|.|||:..|..:...:|....|||.|.:||.:
RBAM_037030      296 LGATKDGILKAADIQLLFDGGAYSDKGVDISRAAVVDCTGPYAIDHIRCD    345

BSNT_04810___    333 GISVFTNNGVAGEFRGFGGNQITFALETHLDRLSGMLGIDPLELRRKNIR    382
                     ...::||:.....|||:...::.||.|..:|.|:..|.:||||||.||..
RBAM_037030      346 SYCMYTNHPYPSAFRGYSHAEVLFAFERTMDVLAEKLNMDPLELRYKNAI    395

BSNT_04810___    383 KPHDLGPLEHRIAPTDGAAQVLNAISKSPILTRTSRNCGYLQRGTGAAIT    432
                     :|.|..|.:          .:||:.:...:.....|....:....|..|.
RBAM_037030      396 RPGDTTPTQ----------VLLNSSTVGNVPKCIERLKELMNWSEGQRIE    435

BSNT_04810___    433 MHG-----GGLG-------YGRMDAAGGRLSLSSEGKITASFGFEECGQG    470
                     :.|     .|:.       :.....:|..|:.:.:|.|....|..|.|.|
RBAM_037030      436 IDGRKIRAKGISCIWKTSTFDTNATSGVILTFNPDGSINLMSGVVEIGTG    485

BSNT_04810___    471 ILAAIEQIVMEELGCAAEDISI-VIGDTAKVPKSGSSTASRGTSMVWHAI    519
                     ....:.||:.|.:......|.: ::.||...|:...:..||||.|..:|:
RBAM_037030      486 TKTVLAQILAERMKMDISKIHVKMLIDTQTTPEHWKTVGSRGTLMAGNAV    535

BSNT_04810___    520 QLLKKPFLAQLKKRAAEWSGCSAENLIPGAAGLRDKNTKALVVTYKELAE    569
                     ....:..:.:||..|:.......|.|......:...:..::.|..|::| 
RBAM_037030      536 LNAAEEAIRKLKDVASCVLRVPVEELEVADGKVYFIDHPSVHVEIKDIA-    584

BSNT_04810___    570 KGPLAEETAFDFPTTPDPVVGGHFL-------------------------    594
                            ..:.||.  ...:||..:                         
RBAM_037030      585 -------YGYTFPN--GNTIGGQIIASGNYTLTRMTNLDRETGRGKPGPE    625

BSNT_04810___    595 YSFGAAAVEVEVDLLTGDVKLIDCEHAIAAGPVVSPQGYRGQIEGGAAMA    644
                     ::.||..:|||:|......::......:..|.|::.:..|||:.||.:|.
RBAM_037030      626 WAVGAQGIEVELDKRDYTYRITKAYSVVDIGTVLNEKAARGQVMGGMSMG    675

BSNT_04810___    645 LGYTLMEEAKMTDGR--YAAENLDHYLIPGIK--------DVPDMKLIAI    684
                     :.:         .||  :..::....|.|.::        :.|:..:..:
RBAM_037030      676 IAF---------GGRETFVFDSYGRVLNPQLRTYRPLHYGEQPEYIIEFV    716

BSNT_04810___    685 EDLMKGDVYGPRGVGEIGTIAITPAIVKAVHDAVGCWINKLPISREELLE    734
                     |.......||.||.||.|.:.:..|:...:..|:|..:|:||:..|:|..
RBAM_037030      717 ETPHVIAPYGARGGGEHGLLGMPAALGNCLSAALGVQLNQLPLIPEQLWR    766

BSNT_04810___    735 AIDRKGLKQWT-    745
                     .  ::|.|..| 
RBAM_037030      767 T--QEGWKDDTV    776


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_04810 and RBAM_037030

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
