Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05534 and RBAM_033480

See DNA alignment / Visit BSNT_05534 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence pep-align/BSNT_05534___ywqC.1.9828.seq
#    -bsequence pep-align/RBAM_033480___ywqC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05534___ywqC-RBAM_033480___ywqC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05534___ywqC-RBAM_033480___ywqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05534___ywqC
# 2: RBAM_033480___ywqC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     181/248 (73.0%)
# Similarity:   212/248 (85.5%)
# Gaps:           0/248 ( 0.0%)
# Score: 889.0
# 
#
#=======================================

BSNT_05534___      1 MGESTSLKEILSTLTKRILLIMIVTAAATAAGGLISFFALTPIYENSTQI     50
                     ||||||:|||.:.|.||:|.|:|:||||:|||||||||||||:|||||||
RBAM_033480__      1 MGESTSIKEIFAILRKRLLFILIITAAASAAGGLISFFALTPVYENSTQI     50

BSNT_05534___     51 LVNQSKNERKEVQFNDVQTNLQLINTYNVIIKSPAILDEVIKEMGLSMTS    100
                     ||:||||.:|||||||||||||||||||||||||.|||||||::.|||||
RBAM_033480__     51 LVSQSKNNQKEVQFNDVQTNLQLINTYNVIIKSPVILDEVIKQLHLSMTS    100

BSNT_05534___    101 QELNDKITVSSEQDSQVVNISVRDENAETAAHIANTIASVFQDKITSIMN    150
                     :||..|||||||||||||.|:|||.:|:.||.:||.:|:|||||||:|||
RBAM_033480__    101 KELESKITVSSEQDSQVVTIAVRDTDAKRAAVMANAVAAVFQDKITAIMN    150

BSNT_05534___    151 VDNVSILSKAEVSEHPSPVSPKPLLNIAIAFAAGLAGSIGLAFLLEHLDN    200
                     |||||||||||.::..||..|...|||||||||||.|.||||||||||||
RBAM_033480__    151 VDNVSILSKAEAADSQSPAEPNRKLNIAIAFAAGLLGGIGLAFLLEHLDN    200

BSNT_05534___    201 TIKSEEQLESLLDIPVLGTVSTIANEQKTAKTLQGFQSEKTGSGHFGA    248
                     ||||||||||||.||:||||::|:.:...||.|:..::::.|.||..|
RBAM_033480__    201 TIKSEEQLESLLGIPILGTVTSISTKDSVAKNLRMAETKQAGGGHVDA    248


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