Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05393 and RBAM_032630

See DNA alignment / Visit BSNT_05393 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence pep-align/BSNT_05393___yviA.1.9828.seq
#    -bsequence pep-align/RBAM_032630___yviA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05393___yviA-RBAM_032630___yviA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05393___yviA-RBAM_032630___yviA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05393___yviA
# 2: RBAM_032630___yviA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 282
# Identity:     242/282 (85.8%)
# Similarity:   265/282 (94.0%)
# Gaps:           1/282 ( 0.4%)
# Score: 1264.0
# 
#
#=======================================

BSNT_05393___      1 MNIAVVTDSTAYIPKEIREQHQIHMIPLQVVFREETYREEIELDWKSFYE     50
                     |.||||||||||||||:||:|.||||||||||.|:|:|||.||||:|||:
RBAM_032630__      1 MKIAVVTDSTAYIPKEMREEHHIHMIPLQVVFGEKTFREETELDWRSFYK     50

BSNT_05393___     51 EVKKHNELPTTSQPPIGELVALYEELGKSYDAVISIHLSSGISGTFSSAA    100
                     |||.|:||||||||..|||:||||||||:||||||||||||||||::|||
RBAM_032630__     51 EVKNHDELPTTSQPSFGELIALYEELGKTYDAVISIHLSSGISGTYNSAA    100

BSNT_05393___    101 AADSMVDNIDVYPFDSEISCLAQGFYALKAAELIKNGASSPEDIIKELEE    150
                     :|::|||:|.|||||||||||||||||||||:|||:|..|||:|||||||
RBAM_032630__    101 SANTMVDHIKVYPFDSEISCLAQGFYALKAAQLIKDGVDSPEEIIKELEE    150

BSNT_05393___    151 MKKTVRAYFMVDDLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNKVIVPF    200
                     ||||||||||||||:||||||||||||||||.||||||||||||||||||
RBAM_032630__    151 MKKTVRAYFMVDDLSHLQRGGRLSSAQAFIGGLLKVKPILHFDNKVIVPF    200

BSNT_05393___    201 EKIRTRKKAISRIYELLDEDASKGLPMRAAVIHANREEEAAKIIEELSAK    250
                     |||||||||||||:||..||||||:||||||||||||||||.||:|||.|
RBAM_032630__    201 EKIRTRKKAISRIFELFGEDASKGIPMRAAVIHANREEEAADIIQELSGK    250

BSNT_05393___    251 YPHVEFYNSYFGAVIGTHLGEGALGICWCFK-    281
                     |||||||||||||||||||||||:||.|||| 
RBAM_032630__    251 YPHVEFYNSYFGAVIGTHLGEGAIGIGWCFKN    282


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.