Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05879 and RBAM_027290

See DNA alignment / Visit BSNT_05879 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:23
# Commandline: needle
#    -asequence pep-align/BSNT_05879___ywaF.1.9828.seq
#    -bsequence pep-align/RBAM_027290___ywaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05879___ywaF-RBAM_027290___ywaF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05879___ywaF-RBAM_027290___ywaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05879___ywaF
# 2: RBAM_027290___ywaF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 239
# Identity:     129/239 (54.0%)
# Similarity:   174/239 (72.8%)
# Gaps:           2/239 ( 0.8%)
# Score: 710.0
# 
#
#=======================================

BSNT_05879___      1 MQKYVQSDYKHDPFHLFSTEHVVTLAIIALLAILLFLFQDGVKQPRASRF     50
                     ||:|.|...:...|||||.||:.||.:|.||.:.:.:|:..:...|::|.
RBAM_027290__      1 MQRYFQLKSETGAFHLFSKEHIFTLLVIGLLGVCVIVFRKQLNYGRSNRV     50

BSNT_05879___     51 LRSLFVFLLLGSQIGYQIWMVATGRWSVRTSLPLQLSDLSVYLSAIMLVT    100
                     .|.:...||..|||.|.||::....||::|:||||||||||||:.:|::|
RBAM_027290__     51 FRYVLFILLAVSQISYHIWLLCHHAWSLKTALPLQLSDLSVYLAMLMVMT    100

BSNT_05879___    101 KSRKLFVFLFFAGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSC    150
                     ||:|||.||:|||:||::||:||||||.:||||.|||:||:|||.|||:|
RBAM_027290__    101 KSKKLFAFLYFAGLGSAVQAMATPDLGAYSFPHFRYIVFFVSHGCVFLTC    150

BSNT_05879___    151 LLMAVIGTNRMGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGG    200
                     |.||.....|...|.|||:||:||:||.|:|.|||.|.|||:||.|||..
RBAM_027290__    151 LFMAASERYRPSARGLWVSVLIVNLYGACVFFIDRVLNANYLYLMKKPKT    200

BSNT_05879___    201 SSLLDVLGPWPWYIVSAEAITVASFFILYMLYRIFKK--    237
                     :|||:|.||||||::|.||..:.||||||:.:.:.:|  
RBAM_027290__    201 ASLLNVFGPWPWYLLSMEAAVILSFFILYIPFWLLRKRA    239


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.