Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04406 and RBAM_027180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence pep-align/BSNT_04406___msmR.1.9828.seq
# -bsequence pep-align/RBAM_027180___msmR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04406___msmR-RBAM_027180___msmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04406___msmR-RBAM_027180___msmR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: RBAM_027180___msmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity: 246/344 (71.5%)
# Similarity: 295/344 (85.8%)
# Gaps: 3/344 ( 0.9%)
# Score: 1277.0
#
#
#=======================================
BSNT_04406___ 1 MVRIKDIALKAKVSSATVSRILNEDESLSVAGETRQRVINIAEELGYQTV 50
|||:|||||:|.|||||||||||:|:||:|..|||::|:.||:|||||..
RBAM_027180__ 1 MVRLKDIALQASVSSATVSRILNKDDSLAVTDETREKVLRIADELGYQPS 50
BSNT_04406___ 51 AKRRKSRGQKQRAQPLIGVLSCLSPDQERQDPYFSSIRKGIEKECFEQEI 100
|||||:|.:...| |||||:|||||:.||||||||:||||||:|||.|::
RBAM_027180__ 51 AKRRKNRSRSDSA-PLIGVVSCLSPEVERQDPYFSAIRKGIEEECFRQKV 99
BSNT_04406___ 101 FITNSIHLGSFQEHIFRELDGVIVIGRVHDEAVKHISGRLEHAVFINHSP 150
|||:||||||||||:|.|||||||||.:.|||:.:||....||||:|.:|
RBAM_027180__ 100 FITSSIHLGSFQEHMFHELDGVIVIGSLQDEALTNISAAFRHAVFVNGTP 149
BSNT_04406___ 151 DPKAYDSIGIDFKSASRQAIDHLFDLGYKRLGYIGGQEKEHTLKDGQSIR 200
||..|||:.:||.:|:::||:||..|||:|||||||:|:|||:.||.:..
RBAM_027180__ 150 DPARYDSVSVDFYAAAQKAIEHLLSLGYQRLGYIGGREREHTVIDGVNSN 199
BSNT_04406___ 201 RTIEDKRLTAFLESAAPQPEHVLIGEYSMREGYRLMKKAIDQGHLPEAFF 250
:|||||||||||:.|..:|||||||||||.||:|||.:||..|.||:|||
RBAM_027180__ 200 KTIEDKRLTAFLQMAGAEPEHVLIGEYSMHEGFRLMNEAIKGGSLPDAFF 249
BSNT_04406___ 251 IASDSMAIGALKALQEAGLQVPRDTAIVSFNGIEEAEFASTPLTTVKVYT 300
|||||||:||||||||||||||||||:||||||:|||:|||||:||||||
RBAM_027180__ 250 IASDSMAVGALKALQEAGLQVPRDTAVVSFNGIDEAEYASTPLSTVKVYT 299
BSNT_04406___ 301 EEMGRTGVKLLLDRLNGRTLPHQVTLPTRLIVRQSCGCTAKEVT 344
|||||||||||||||||||:|..|||||.||||||||...:.
RBAM_027180__ 300 EEMGRTGVKLLLDRLNGRTVPLAVTLPTSLIVRQSCGSQERR-- 341
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