Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04313 and RBAM_026550

See DNA alignment / Visit BSNT_04313 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:46
# Commandline: needle
#    -asequence pep-align/BSNT_04313___hisJ.1.9828.seq
#    -bsequence pep-align/RBAM_026550___hisJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04313___hisJ-RBAM_026550___hisJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04313___hisJ-RBAM_026550___hisJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04313___hisJ
# 2: RBAM_026550___hisJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     178/270 (65.9%)
# Similarity:   214/270 (79.3%)
# Gaps:           2/270 ( 0.7%)
# Score: 971.0
# 
#
#=======================================

BSNT_04313___      1 MQKRDGHIHTPFCPHGSNDTLRQYAEEALKKGFESITFTEHAPLPPSFTD     50
                     |:|||.|||||||||||.|.|:||.|:||::||:||||||||||||||.|
RBAM_026550__      1 MEKRDAHIHTPFCPHGSKDALKQYVEKALERGFDSITFTEHAPLPPSFQD     50

BSNT_04313___     51 PTPLKDSAMAQASLERYIHEISGLKKEYRGQLSIRTGLEVDYIAEFEDEI    100
                     |.||:||||....:|.|:..:|.|||||.||:||.||||.|:|..:|:|.
RBAM_026550__     51 PVPLQDSAMDLRQMEVYLERLSQLKKEYDGQISILTGLETDFITGYEEET    100

BSNT_04313___    101 TLFLDTYGPYLDDSILSVHFLRTDSSYLCLDYDEHTFKELISACGSIEAV    150
                     ..||:||||.|||.|||||||:|..||:|||:|||.|::|....||||||
RBAM_026550__    101 AAFLNTYGPSLDDGILSVHFLKTGPSYICLDFDEHAFQQLADHFGSIEAV    150

BSNT_04313___    151 YEQYYRSIYSSIVASLGVYKPKRVGHITLVQKFIKLFPYSMSEHIRGLVS    200
                     |||||.::|||||..||.:|||||||||||:||.:|||||||..||.|.:
RBAM_026550__    151 YEQYYETVYSSIVTPLGPFKPKRVGHITLVKKFARLFPYSMSPQIRELAA    200

BSNT_04313___    201 LCLNAIEENGMELDFNTSGLRKTYAGGIYIEDWMLNEAKQKKIPLVFGSD    250
                     .||:|::|:|||||.|||||||.:||.:|:||||...||||||||:||||
RBAM_026550__    201 RCLDAVKEHGMELDVNTSGLRKKFAGEVYMEDWMAETAKQKKIPLIFGSD    250

BSNT_04313___    251 AHQAGDVGYAYEAFLERC--    268
                     ||||.|||.:||.:....  
RBAM_026550__    251 AHQAEDVGSSYETYKNIITS    270


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.