Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01536 and RBAM_009340

See DNA alignment / Visit BSNT_01536 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence pep-align/BSNT_01536___yhcG.1.9828.seq
#    -bsequence pep-align/RBAM_009340___yhcG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01536___yhcG-RBAM_009340___yhcG.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01536___yhcG-RBAM_009340___yhcG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01536___yhcG
# 2: RBAM_009340___yhcG
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity:     156/244 (63.9%)
# Similarity:   191/244 (78.3%)
# Gaps:          12/244 ( 4.9%)
# Score: 791.0
# 
#
#=======================================

BSNT_01536___      1 ------MEIKLEHVSKKYGRHTAVNDVSITLSSGRIYGLIGPNGSGKSTT     44
                           |.:..|.|:|||||..||:|||.:||.|:|||::||||||||||
RBAM_009340__      1 MRRKQTMNLDFERVTKKYGRRLAVSDVSFSLSPGKIYGILGPNGSGKSTT     50

BSNT_01536___     45 LKMMAGLLFPTSGFVKVDEEQVTREMVRQTAYLTELDMFYPHFTVKDMVN     94
                     |||:|||.|||||.|::.:..|:|.|:.:||||||.|||....||.||:.
RBAM_009340__     51 LKMLAGLAFPTSGAVRIGDCAVSRNMLFRTAYLTEHDMFSARTTVGDMLT    100

BSNT_01536___     95 FYQSQFPDFQTEQAYKLLNEMQLNPEKKIKKLSKGNRGRLKIVLALARRA    144
                     ||.|||||||.|:|:.||.||.|:.::|||:||||:||||||||||:|:|
RBAM_009340__    101 FYHSQFPDFQLEKAHNLLTEMNLSAKQKIKELSKGSRGRLKIVLALSRKA    150

BSNT_01536___    145 DVIVLDEPFSGLDPMVRDSIVNSLVSYIDFEQQIVVIATHEIDEIETLLD    194
                     .||:||||||||||.||:||||||||||||:.||||||||||.|||||||
RBAM_009340__    151 SVILLDEPFSGLDPAVRESIVNSLVSYIDFDSQIVVIATHEIGEIETLLD    200

BSNT_01536___    195 EVIILANGEKVAQREVEDIREQEGMSVLQWFKSKMEVC------    232
                     ||::...|:...:||||:||||||||||||::|.|:..      
RBAM_009340__    201 EVMVFIKGKIAERREVEEIREQEGMSVLQWYRSVMQAHEIEGGF    244


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