Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00538 and RBAM_003280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence pep-align/BSNT_00538.1.9828.seq
# -bsequence pep-align/RBAM_003280___amyE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00538-RBAM_003280___amyE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00538-RBAM_003280___amyE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00538
# 2: RBAM_003280___amyE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 427/659 (64.8%)
# Similarity: 451/659 (68.4%)
# Gaps: 182/659 (27.6%)
# Score: 2282.0
#
#
#=======================================
BSNT_00538 1 MFAKRFKTSLLPLFAGFLLLFYLVLAGPAAASAETANKSNELTAPSIKSG 50
||.||||||||||||||||||:|||:|||||:||||||||::||.|:|:|
RBAM_003280__ 1 MFEKRFKTSLLPLFAGFLLLFHLVLSGPAAANAETANKSNKVTASSVKNG 50
BSNT_00538 51 TILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWY 100
|||||||||||||..|||||.||||.||||||||||||||||||||.|||
RBAM_003280__ 51 TILHAWNWSFNTLTQNMKDIRDAGYAAIQTSPINQVKEGNQGDKSMRNWY 100
BSNT_00538 101 WLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTSDYAA 150
||||||||||||||||||||||:||||||:||:|||||||||||||||.|
RBAM_003280__ 101 WLYQPTSYQIGNRYLGTEQEFKDMCAAAEKYGVKVIVDAVINHTTSDYGA 150
BSNT_00538 151 ISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLPGLYDWNTQNTQVQSYLK 200
||:|:|.|||||||||||||||||||||||||.||||||||||:||.|||
RBAM_003280__ 151 ISDEIKRIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTEVQVYLK 200
BSNT_00538 201 RFLERALNDGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEI 250
|||||||||||||||:||||||||||||:|||||||||||||||||||||
RBAM_003280__ 201 RFLERALNDGADGFRYDAAKHIELPDDGNYGSQFWPNITNTSAEFQYGEI 250
BSNT_00538 251 LQDSASRDAAYANYMDVTASNYGHSIRSALKNRNLGVSNISHYASDVSAD 300
||||||||.||||||:|||||||||||||||||||.||||||||||||||
RBAM_003280__ 251 LQDSASRDTAYANYMNVTASNYGHSIRSALKNRNLSVSNISHYASDVSAD 300
BSNT_00538 301 KLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEG 350
||||||||||||||||||||||||||||||||||.|||||||||||||||
RBAM_003280__ 301 KLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIGSRSGSTPLFFSRPEG 350
BSNT_00538 351 GGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQHEELSNPNGNN 400
|||||||||||||||||||||:||||||||.||||||||.||||||||||
RBAM_003280__ 351 GGNGVRFPGKSQIGDRGSALFKDQAITAVNTFHNVMAGQPEELSNPNGNN 400
BSNT_00538 401 QIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGK 450
|:|||||||.||||||||||||:|||:.|||||||||:||||||||.:||
RBAM_003280__ 401 QVFMNQRGSKGVVLANAGSSSVTINTSAKLPDGRYDNRAGAGSFQVANGK 450
BSNT_00538 451 LTGTINARSVAVLYPDDIEIRCNTFFQ----------------------- 477
|||||||||.||||||||....:.|.:
RBAM_003280__ 451 LTGTINARSAAVLYPDDIGNAPHVFLENYQTGAVHSFNDQLTVTLRANAK 500
BSNT_00538 477 -------------------------------------------------- 477
RBAM_003280__ 501 TTKAVYQINNGQQTAFKDGDRLTIGKGDPIGTTYNIKLTGTNGEGAARTQ 550
BSNT_00538 477 -------------------------------------------------- 477
RBAM_003280__ 551 EYTFVKKDPSQTNIIGYQNPDHWGQVNAYIYKHDGGRAIELTGSWPGKAM 600
BSNT_00538 477 -------------------------------------------------- 477
RBAM_003280__ 601 TKNANGMYTLTLPENTDTANAKVIFNNGSAQVPGQNQPGFDYVQNGLYNN 650
BSNT_00538 477 --------- 477
RBAM_003280__ 651 SGLNGYLPH 659
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