Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05540 and BPUM_3281

See DNA alignment / Visit BSNT_05540 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence pep-align/BSNT_05540___ywpJ.1.24716.seq
#    -bsequence pep-align/BPUM_3281___ywpJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05540___ywpJ
# 2: BPUM_3281___ywpJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:     182/286 (63.6%)
# Similarity:   230/286 (80.4%)
# Gaps:          13/286 ( 4.5%)
# Score: 978.0
# 
#
#=======================================

BSNT_05540___      1 MKLIAIDLDGTLLNSKHQVSLENENALRQAQLDGIEVVVSTGRAHFDVMS     50
                                 :||:|:||.|||.||::|..:.:|||||||||:|||.|
BPUM_3281___y      1 ------------MNSEHKVSRENEQALKEAAANRMEVVVSTGRAYFDVRS     38

BSNT_05540___     51 IFEPLGIKTWVISANGAVIHDPDGRLYHHETIDKKRAYDILSWLESENYY    100
                     ||:.||:.||||||||||||||.|::||...:.:::|..||||||...||
BPUM_3281___y     39 IFDELGMNTWVISANGAVIHDPTGQVYHSAALQEEKAKRILSWLEERGYY     88

BSNT_05540___    101 YEVFTGSAIYTPQNGRELLDVELDRFRSANPETDLSVLKQAAEVQYSQSG    150
                     |||||..||:||..|||||.:|:||.:|||||||||||||||||||||||
BPUM_3281___y     89 YEVFTNEAIFTPNRGRELLAIEMDRLKSANPETDLSVLKQAAEVQYSQSG    138

BSNT_05540___    151 FAYINSFQELFEADQPIDFYNILGFSFFKEKLEAGWKRYEHAEDLTLVSS    200
                     |:||::::|||..|:.:.||||||||||:::|:|||.::.....:|:|||
BPUM_3281___y    139 FSYIDTYKELFHEDRKLSFYNILGFSFFEDRLKAGWDQFGDDASVTMVSS    188

BSNT_05540___    201 AEHNFELSSRKASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGK    250
                     |:||||:.::.|||||||.|||::|.|||.:||||||||||:|||.|||.
BPUM_3281___y    189 ADHNFEIGAKDASKGQALTRLAERLGIPLSQTAAVGDSLNDESMLRAAGV    238

BSNT_05540___    251 GVAMGNAREDIKSIADAVTLTNDEHGVAHMMKHLM-    285
                     |:||||||:|||.|||.|||||||||||||::||: 
BPUM_3281___y    239 GIAMGNARQDIKEIADHVTLTNDEHGVAHMIRHLLK    274


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.