Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03893 and BPUM_0842

See DNA alignment / Visit BSNT_03893 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence pep-align/BSNT_03893___yrpD.1.24716.seq
#    -bsequence pep-align/BPUM_0842___yrpD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03893___yrpD-BPUM_0842___yrpD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03893___yrpD-BPUM_0842___yrpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03893___yrpD
# 2: BPUM_0842___yrpD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     146/256 (57.0%)
# Similarity:   185/256 (72.3%)
# Gaps:          21/256 ( 8.2%)
# Score: 737.0
# 
#
#=======================================

BSNT_03893___      1 MIGGNNDDEKR-----------SACGCAYGNRAFGTCAVDVPGIISPKTA     39
                     ||..:|::..|           ||...|.   ..|...|.|||:...:..
BPUM_0842___y      1 MITFSNNESIRRKNEMKKLLITSAISSAI---LLGAIPVSVPGLSQTQEI     47

BSNT_03893___     40 EAASQLTDGIGGRAYLNSNGAILVTKIQLPSSTQVSNGTAYIYSGFSGGT     89
                     ||| ||:.|||||.|:||||:||||||||||:..||||||||||||:|..
BPUM_0842___y     48 EAA-QLSKGIGGRTYINSNGSILVTKIQLPSAMSVSNGTAYIYSGFTGSK     96

BSNT_03893___     90 ESDIGLQYSDKYNVWKPYMKVGSKGQDQVQYLEGGSQFTNTKGFRPGSTV    139
                     |:|||||||..||||||.||||:..|:  .|:||.:.||.||||:|||.|
BPUM_0842___y     97 EADIGLQYSSTYNVWKPTMKVGANNQE--TYIEGKNDFTYTKGFKPGSIV    144

BSNT_03893___    140 QLTIYKNLNGNTRATYWGTNNAGYNGRLISEISKTNVGSISKWKALATVA    189
                     |:||||||||:||||:|||||.||.||:|:||..:|:||::|||.|:|||
BPUM_0842___y    145 QMTIYKNLNGHTRATFWGTNNVGYTGRIITEIQNSNIGSVTKWKLLSTVA    194

BSNT_03893___    190 TTGS--RQSIKSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLS    237
                     .|..  |:.|::||||.||:||:|::|:|||||||||..:.||||:|::.
BPUM_0842___y    195 VTDDIYRKDIRANFSTRFTDITLDSRAVTPVIDTQDFTSIQVSGNTVNMQ    244

BSNT_03893___    238 VVKN--    241
                     |:|.  
BPUM_0842___y    245 VLKTTN    250


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