Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06288 and RBAM_038120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:44
# Commandline: needle
# -asequence dna-align/BSNT_06288___trmE.1.9828.seq
# -bsequence dna-align/RBAM_038120___trmE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06288___trmE-RBAM_038120___trmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06288___trmE-RBAM_038120___trmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06288___trmE
# 2: RBAM_038120___trmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity: 1113/1383 (80.5%)
# Similarity: 1113/1383 (80.5%)
# Gaps: 6/1383 ( 0.4%)
# Score: 4468.0
#
#
#=======================================
BSNT_06288___ 1 ATGGATACAATTGCGGCAATTTCCACACCGATGGGAGAAGGCGCGATTGC 50
||||||||||||||.||.|||||.||.||||||||.|||||||||||.||
RBAM_038120__ 1 ATGGATACAATTGCAGCGATTTCAACTCCGATGGGTGAAGGCGCGATCGC 50
BSNT_06288___ 51 GATTGTACGGTTGAGCGGACCAGAAGCCATTCAAATCGCAGATAAAATTT 100
|||.||.|||.|||||||.||.||||||.|..|.|||||.||.|||||.|
RBAM_038120__ 51 GATCGTTCGGCTGAGCGGCCCGGAAGCCGTAAAGATCGCCGACAAAATGT 100
BSNT_06288___ 101 ATAAGGGACCGAAGGGGAAAACACTCAGCTCGGTCGAATCACATACGATT 150
|.|||||.|||||.||.|||||.|||||.||||..|||||.|||||.|||
RBAM_038120__ 101 ACAAGGGTCCGAAAGGCAAAACGCTCAGTTCGGCAGAATCGCATACCATT 150
BSNT_06288___ 151 CATTATGGTCATATCGTAGACAGACCTTCGGATCGTGTCGTTGAGGAAGT 200
|||||.||.|||||||..|||||..|..|||..||..|..||||||||||
RBAM_038120__ 151 CATTACGGGCATATCGCGGACAGCACGACGGGACGGATTATTGAGGAAGT 200
BSNT_06288___ 201 AATGGTATCAGTGTTAAAAGCGCCGAGAACTTTTACACGGGAAGATGTTA 250
.|||||.||.||.||||.|||.||.|||||.||.|||.||||||||||.|
RBAM_038120__ 201 CATGGTGTCTGTTTTAAGAGCCCCCAGAACATTCACAAGGGAAGATGTCA 250
BSNT_06288___ 251 TCGAGATAAACTGTCACGGGGGAATTGTGACTGTGAACCAAGTGCTTCAG 300
|.||.||.||||||||||||||.||||||||.||.||.||.|||||.|||
RBAM_038120__ 251 TTGAAATCAACTGTCACGGGGGTATTGTGACGGTTAATCAGGTGCTCCAG 300
BSNT_06288___ 301 CTCGCATTGAGAGAGGGGGCGAGACTGGCAGAGCCTGGCGAATTTACGAA 350
||.||.||.|||||.||.||||||||||||||.||.||.||.||||||||
RBAM_038120__ 301 CTTGCTTTAAGAGAAGGTGCGAGACTGGCAGAACCCGGTGAGTTTACGAA 350
BSNT_06288___ 351 ACGTGCGTTTTTAAACGGGCGAATCGATCTTTCACAGGCGGAAGCGGTTA 400
.||.||.|||||||||||.||.||.||.||.|||||||||||||||||.|
RBAM_038120__ 351 GCGCGCATTTTTAAACGGACGGATTGACCTATCACAGGCGGAAGCGGTGA 400
BSNT_06288___ 401 TGGACTTAATCAGAGCGAAAACGGACCGGGCAATGAACGTTGCTATGAAT 450
||||..|.|||||.||.|||||||||||.||.|||||.||.||.|||||.
RBAM_038120__ 401 TGGATCTGATCAGGGCCAAAACGGACCGTGCCATGAATGTCGCCATGAAC 450
BSNT_06288___ 451 CAAATGGAAGGGCGTCTTTCTGCTTTGGTGCGCCGTTTGCGCAGTGAGAT 500
||.||||||||.||.|||||.||..|.||.||||||.||||...||||.|
RBAM_038120__ 451 CAGATGGAAGGACGGCTTTCCGCGCTTGTCCGCCGTCTGCGTGATGAGTT 500
BSNT_06288___ 501 TTTAGAAACACTGGCCCATGTTGAGGTGAATATCGATTATCCGGAGTATG 550
.|||||||||||.||||||||||||||.|||||.|||||||||||.||||
RBAM_038120__ 501 GTTAGAAACACTTGCCCATGTTGAGGTTAATATAGATTATCCGGAATATG 550
BSNT_06288___ 551 ATGATGTAGAGGAAATGACGCATCAGATTTTAGTCGAAAAGGCAACCGCC 600
||||.||.||.|||||||||||||||.|||||||.||.|||||||.||.|
RBAM_038120__ 551 ATGACGTCGAAGAAATGACGCATCAGCTTTTAGTGGAGAAGGCAAGCGGC 600
BSNT_06288___ 601 GTGAAAAAGGAAATTGAGGCGCTGCTGAGGACTTCTGAGCAAGGAAAAAT 650
|||||.||.|||||.|||||||||||..|.||.||||||||.||.|||||
RBAM_038120__ 601 GTGAAGAAAGAAATCGAGGCGCTGCTCCGTACGTCTGAGCAGGGGAAAAT 650
BSNT_06288___ 651 CTTGCGTGAAGGTCTTTCTACCGTCATTATCGGCCGGCCGAACGTAGGAA 700
.||||||||.||.||.||||||||.||.||||||||.||||||||.||||
RBAM_038120__ 651 TTTGCGTGAGGGACTGTCTACCGTGATCATCGGCCGTCCGAACGTCGGAA 700
BSNT_06288___ 701 AATCATCTCTTCTGAACAGCCTCGTTCATGAGGCAAAAGCCATTGTAACC 750
||||.|||||.||.||||||||.||.|||||..|.||.||.||.||||||
RBAM_038120__ 701 AATCCTCTCTGCTTAACAGCCTTGTCCATGAAACGAAGGCGATCGTAACC 750
BSNT_06288___ 751 GATATTCCCGGAACGACACGGGATGTAATTGAGGAATACGTGAATGTAAG 800
||||||||.||||||||.||.|||||.|||||||||||.||.|||||..|
RBAM_038120__ 751 GATATTCCGGGAACGACGCGTGATGTGATTGAGGAATATGTCAATGTCCG 800
BSNT_06288___ 801 GGGCGTCCCGCTTCGTCTGGTTGATACAGCAGGTATTCGCGAAACAGAGG 850
.|||||.||||||||.||.||.|||||.||.||.||.||.||.|||||.|
RBAM_038120__ 801 AGGCGTGCCGCTTCGGCTTGTCGATACCGCCGGAATCCGTGAGACAGAAG 850
BSNT_06288___ 851 ATATTGTTGAGCGAATCGGTGTTGAACGTTCTCGCCAGGTTCTAAAGGAA 900
|.||.||.||..||||||||||.|||||.||.||.||||||||.||||||
RBAM_038120__ 851 ACATCGTCGAAAGAATCGGTGTGGAACGGTCACGGCAGGTTCTGAAGGAA 900
BSNT_06288___ 901 GCGGACCTGATTTTACTTGTGCTTAATTATAGTGAAGAGCTTTCTGAAGA 950
|||||.||.|||||.|||||||||||..|.||.|||||||||||||||||
RBAM_038120__ 901 GCGGATCTCATTTTGCTTGTGCTTAACCACAGCGAAGAGCTTTCTGAAGA 950
BSNT_06288___ 951 AGACGTGAAGCTTTTTGAAGCCGTTGAGGGCATGGATGTTATCGTGATTT 1000
|||.|||||..|.||||||||.||||||||.|||||.||.||.||.|||.
RBAM_038120__ 951 AGATGTGAAATTGTTTGAAGCGGTTGAGGGAATGGACGTCATTGTCATTA 1000
BSNT_06288___ 1001 TGAATAAGACTGACCTTGAGGCGAAGATTGACACTGAACGTGTCCGTGAG 1050
||||||||||.|||||||||||.|||||||||.||||.||.|||...||.
RBAM_038120__ 1001 TGAATAAGACGGACCTTGAGGCTAAGATTGACGCTGAGCGCGTCAAGGAA 1050
BSNT_06288___ 1051 CTTGCCAATGGACGTCCAGTTGTTACGACATCTCTTT--TAAAAGAGGAA 1098
||.||.||.||.||.||.||.||.||||| |||.|| |.|||||.|||
RBAM_038120__ 1051 CTGGCGAAAGGCCGGCCTGTCGTCACGAC--CTCATTGCTGAAAGAAGAA 1098
BSNT_06288___ 1099 GGCA-TCAATGATCTGGAAGAAGCGATTCAATCATTGTTCTACACGGGTG 1147
|||| |||| |||.|.||.|||||||||||.||..|.||.||.||.||.|
RBAM_038120__ 1099 GGCATTCAA-GATTTAGAGGAAGCGATTCAGTCGCTATTTTATACAGGAG 1147
BSNT_06288___ 1148 CCATTGAAAGCGGTGATCTGACTTATGTCAGCAACACACGTCACATCTCT 1197
|.||.||||||||.|||||.||.||||||||||||||.|||||.|||||.
RBAM_038120__ 1148 CGATCGAAAGCGGAGATCTCACCTATGTCAGCAACACCCGTCATATCTCG 1197
BSNT_06288___ 1198 ATTTTACAGCAAGCAAAACGCGCCATTGAAGATGCGCTTAGCGGCATCGA 1247
||..|.||.||.|||||.|..||.|||||.||||||||.|.|||.||.||
RBAM_038120__ 1198 ATACTGCATCAGGCAAAGCAAGCGATTGATGATGCGCTGAACGGAATTGA 1247
BSNT_06288___ 1248 ACAGGATGTCCCGATCGACATGGTGCAAATTGACCTTACAAGATGCTGGG 1297
|||||||||.|||||.||.|||||.||||||||..|.|||||.|||||||
RBAM_038120__ 1248 ACAGGATGTTCCGATTGATATGGTCCAAATTGATTTGACAAGGTGCTGGG 1297
BSNT_06288___ 1298 AGCTTTTAGGGGAAATCATTGGAGATTCTGTCCACGAAAGCTTAATTGAT 1347
||||..|.||.||||||||.||.|||.|.|||||||||||||||||||||
RBAM_038120__ 1298 AGCTGCTGGGCGAAATCATCGGTGATGCCGTCCACGAAAGCTTAATTGAT 1347
BSNT_06288___ 1348 CAGCTCTTTTCACAATTCTGTTTAGGAAAATAA 1380
|||||||||||||||||.||||||||.||||||
RBAM_038120__ 1348 CAGCTCTTTTCACAATTTTGTTTAGGTAAATAA 1380
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