Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_06271 and RBAM_038000

See Amino acid alignment / Visit BSNT_06271 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:43
# Commandline: needle
#    -asequence dna-align/BSNT_06271___rpsF.1.9828.seq
#    -bsequence dna-align/RBAM_038000___rpsF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06271___rpsF-RBAM_038000___rpsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06271___rpsF-RBAM_038000___rpsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06271___rpsF
# 2: RBAM_038000___rpsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     266/288 (92.4%)
# Similarity:   266/288 (92.4%)
# Gaps:           0/288 ( 0.0%)
# Score: 1242.0
# 
#
#=======================================

BSNT_06271___      1 ATGAGAAAGTACGAAGTTATGTACATTATCCGCCCAAACATTGACGAAGA     50
                     ||||.|||||||||||||||||||||||||||.||.||||||||||||||
RBAM_038000__      1 ATGAAAAAGTACGAAGTTATGTACATTATCCGTCCGAACATTGACGAAGA     50

BSNT_06271___     51 GTCTAAAAAAGCAGTTATCGAGCGTTTCAACAACGTTCTGACTTCTAACG    100
                     |||.||.||.||||||||||||||||||||||||||..||||||||||||
RBAM_038000__     51 GTCAAAGAAGGCAGTTATCGAGCGTTTCAACAACGTATTGACTTCTAACG    100

BSNT_06271___    101 GTGCGGAGATCACTGGAACAAAGGATTGGGGTAAACGTCGTCTTGCTTAC    150
                     |.||||||||||||||||||||.|||||||||||||||||||||||||||
RBAM_038000__    101 GAGCGGAGATCACTGGAACAAAAGATTGGGGTAAACGTCGTCTTGCTTAC    150

BSNT_06271___    151 GAAATCAACGATTTCCGCGACGGTTTCTACCAAATCGTAAACGTTCAATC    200
                     |||||||||||||||||.||||||||||||||||||.||||||||||.||
RBAM_038000__    151 GAAATCAACGATTTCCGTGACGGTTTCTACCAAATCTTAAACGTTCAGTC    200

BSNT_06271___    201 TGACGCTGCGGCAGTTCAAGAATTTGACCGTCTAGCTAAGATCAGTGACG    250
                     |||.|||||.||.|||...|||||.||||||.||||||||||||||||||
RBAM_038000__    201 TGAAGCTGCAGCGGTTGCTGAATTCGACCGTTTAGCTAAGATCAGTGACG    250

BSNT_06271___    251 ATATCATTCGCCACATTGTTGTTAAAGAAGAAGAATAA    288
                     ||||||||||||||||.|||||||||||||||||||||
RBAM_038000__    251 ATATCATTCGCCACATCGTTGTTAAAGAAGAAGAATAA    288


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.