Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06260 and RBAM_037930

See Amino acid alignment / Visit BSNT_06260 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:42
# Commandline: needle
#    -asequence dna-align/BSNT_06260___yyaH.1.9828.seq
#    -bsequence dna-align/RBAM_037930___yyaH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06260___yyaH-RBAM_037930___yyaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06260___yyaH-RBAM_037930___yyaH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06260___yyaH
# 2: RBAM_037930___yyaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     274/394 (69.5%)
# Similarity:   274/394 (69.5%)
# Gaps:          29/394 ( 7.4%)
# Score: 890.5
# 
#
#=======================================

BSNT_06260___      1 -------TTGAATATACATACAGCGATCTGGGTCAAAGATTTAGAGCGAA     43
                            ||||    ||||.|||||||.|||||.||||||||.|||||.|
RBAM_037930__      1 ATGCGAATTGA----ACATGCAGCGATATGGGTGAAAGATTTGGAGCGGA     46

BSNT_06260___     44 TGAAGGCTTTTTACGAAACGTATTTTAACGGCAAAGCGAATGATTTGTAC     93
                     ||||....|||||.||.|..||.||...||.|||.||.|||||..|.||.
RBAM_037930__     47 TGAAAAAATTTTATGAGAAATACTTCGGCGCCAAGGCCAATGACCTTTAT     96

BSNT_06260___     94 CATAATGAGAAAAAAGATTTTAAGTCTTATTTTATTACGTTTGATTCCGG    143
                     ||||||||||||||||||||.||.||.||||||.||.|.|||||.||.||
RBAM_037930__     97 CATAATGAGAAAAAAGATTTCAAATCGTATTTTCTTTCATTTGACTCTGG    146

BSNT_06260___    144 AGGAAGGCTGGAAATGATGAAAAAAG--GAAATGTGACTGA---TCCGCC    188
                     |.|.|||||||||.|.||||||||||  |..|| ||| |||   ||||  
RBAM_037930__    147 ATGCAGGCTGGAACTTATGAAAAAAGGCGGCAT-TGA-TGAAGTTCCG--    192

BSNT_06260___    189 TTCACCAACGATGACAGGCTGGGCCCATATTGCCTTTTCTGTTGGAAGCC    238
                      ||||..|..|||||.||.|||||.|||.|.||.||||||...||.|||.
RBAM_037930__    193 -TCACAGAATATGACCGGATGGGCGCATCTCGCATTTTCTACAGGCAGCA    241

BSNT_06260___    239 GGAAGAAGGTTGATGAACTGACTGATCGA--TTGAAGAAGGATGG-TTTC    285
                     .|.||..|||..|||||.||||.||  ||  ||.||.||.||||| ||| 
RBAM_037930__    242 AGGAGCGGGTGAATGAATTGACGGA--GACGTTTAAAAATGATGGATTT-    288

BSNT_06260___    286 GCA-GTAGTAAACGGCCCAAGGACAACTGGAGATGGCTACTATGAAAGTG    334
                      || ||.||||.||||||..|....||.||.||.||.||.|||||.||.|
RBAM_037930__    289 -CAGGTTGTAAGCGGCCCGCGCGTGACGGGTGACGGATATTATGAGAGCG    337

BSNT_06260___    335 TGCTTGAAGATGATGAAGGAAATTTGATCGAGATTACAATCTGA    378
                     ||.|.||.||||..|||||.||||||||.||.||.|||.|.|.|
RBAM_037930__    338 TGATAGAGGATGGGGAAGGCAATTTGATAGAAATCACAGTGTAA    381


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