Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06243 and RBAM_037730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence dna-align/BSNT_06243.1.9828.seq
# -bsequence dna-align/RBAM_037730___yybF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06243-RBAM_037730___yybF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06243-RBAM_037730___yybF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06243
# 2: RBAM_037730___yybF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity: 371/1308 (28.4%)
# Similarity: 371/1308 (28.4%)
# Gaps: 813/1308 (62.2%)
# Score: 775.0
#
#
#=======================================
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 1 ATGACTTACATTCGCCGCGGCACACTTCAATTCAAAAAGGTAAACTTCGC 50
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 51 TTTGTTTGCTGGCGGATTTTGCACGTTTGCCATCCTTTGGGGAACGCAGC 100
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 101 CGCTGCTGCCTGATATCGCAAACGATTTTCACCTGTCACCGGCGGTTTCA 150
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 151 AGCTTAAGCCAATCAGCGGCAACGATTGCTTTAGCCATCAGTCTGGTATT 200
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 201 CGCCGGTTTTTTATCAGAAATGTACGGGCGGAAGCAGATAATGGGCGTGT 250
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 251 CATTATTTGCTGCATCCATCCTAGCCGTTCTCACAGGGTTTGTTTCGGAC 300
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 301 TTTCAGCTGCTCGTCGTTTGCAGGGCGCTGCAGGGAGCCGCATTAGCGGG 350
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 351 GCTTCCCGCCGCGGCAATGGCTTATTTAGCTGAAGAAATCGAGCCGGACA 400
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 401 GCTTAGGAATGGCAATGGGGCTTTATATCAGCGGAAACTCGATTGGCGGC 450
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 451 ATGACGGGACGCATCATCAGCGGCTTTCTGACGGATTCCTTCAGCTGGCA 500
BSNT_06243 0 -------------------------------------------------- 0
RBAM_037730__ 501 TTCGGCTTTGCTGACGATCGGCCTCATCAGTTTGCTGGCAAGCATTATCT 550
BSNT_06243 1 ---------------ATGTCTCTGAT------------CGGCCACTTGAG 23
.|||||||..| |||.||..|.|.
RBAM_037730__ 551 TCTGGACGATCCTTCCTGTCTCTTCTCATTTTACGCCCCGGACATATAAA 600
BSNT_06243 24 GG-----------------------ACCGTAAACTA-------------T 37
.| |||||.|| || |
RBAM_037730__ 601 AGAAACGACATTTTTACCTCATTTTACCGTCAA-TACAGGATGCCCGGTT 649
BSNT_06243 38 TCAGCT---TGTTTCTCATTGTTTTTTTGCTGCTTGGAA----GCAATGT 80
||.||| |.||..||||.|.|||||| .|||||| ||..|||
RBAM_037730__ 650 TCGGCTGCCTTTTGATCATCGGTTTTTT----ATTGGAAGCCGGCTTTGT 695
BSNT_06243 81 TGCCTTGTTTAATTACATTGTGT-----ATGTGCTGTTGGGCCCGCCGTA 125
..|.||.|.|||.||.||.| || || ||.||...|||||.||
RBAM_037730__ 696 ATCTTTATATAACTATATCG-GTTTTCAAT----TGATGAAGCCGCCTTA 740
BSNT_06243 126 TTCGCTTAA--TAAA--GCATTTTCCAGCTGGATCTTTATTGTGATGA-- 169
|||.| ||| .||| |||.| |.|.|..||.|||.|.|| || |
RBAM_037730__ 741 TTCAC-TAAGCCAAACGGCAGT---CGGGTTTATTTTTCTCGT-AT-ACC 784
BSNT_06243 170 TTGTAGGCATTTTCAGCTCGTCTTTCATTGGAAGAATGGTTGATCGGTAT 219
||||.||.|..|||||.|| |..||.|||.||.||
RBAM_037730__ 785 TTGTCGGAACGTTCAGTTC----------------AACGTGGATGGGCAT 818
BSNT_06243 220 G---GC-----TATCCG--------AAAAT------------ATTGGTGA 241
| || .||.|| ||||| |||||||
RBAM_037730__ 819 GTTAGCAGACAAATACGGCAAAAGAAAAATCCTGCCATTCTCATTGGTG- 867
BSNT_06243 242 TGAATATTTTCATCGTCATTGCAG-GTGCGTTA-TTTACGATAAACAATA 289
|||.||| |.||||..| .|||.||| ||| ||.
RBAM_037730__ 868 -----ATTGTCA---TGATTGGTGTCTGCATTACTTT----------ATC 899
BSNT_06243 290 TGCT------GGCAGTGAAAATTCTGGGGATTGCCCTCTTTACATTCGGT 333
|||| ||.| |.|..|||.|.||..||||..|.||.||||||||.
RBAM_037730__ 900 TGCTGATATAGGGA-TCATGATTTTAGGAGTTGCGATTTTCACATTCGGC 948
BSNT_06243 334 TTTTTCGGAGGGCATTCAGTTGCCAGCAGCTGGGTGGGCAGGAGA----G 379
|||||.|..||.|||||..|..|||||||||||||.||| || |
RBAM_037730__ 949 TTTTTTGCGGGCCATTCGATCTCCAGCAGCTGGGTTGGC----GAACTGG 994
BSNT_06243 380 CCCTTCACAACAAAGCACAGGCTTCATCGC-----TGTATTTGTTCTTTT 424
||.|.|.|.|.||.|||||||| ||| |.||||||||.|..|
RBAM_037730__ 995 CCGTACGCGATAAGGCACAGGC-----CGCGGCCTTATATTTGTTTTCCT 1039
BSNT_06243 425 ATTACGCCGGTTCAAGTGTTTTCAGAACAATCGGAGGGCTATTCTG---- 470
||||.|..|| || |.|..|||||.||| .|||
RBAM_037730__ 1040 ATTATGTGGG----AG--------GGAGCATCGGGGGG----ACTGCAAG 1073
BSNT_06243 471 -GTCTGGTTT---TCAC-----TGGCTG----GGCGTTGTCGGTATGATC 507
|.| |.||| |||| .||||| |||.|||.||..||||||
RBAM_037730__ 1074 CGGC-GCTTTCTATCACCAATTCGGCTGGGGCGGCATTGCCGTCATGATC 1122
BSNT_06243 508 AC----CTTCATGCTGCTGATTGCGC-----------TATGGCTGTCGGG 542
|| || |.||||.|.||..|| |.||||| |||
RBAM_037730__ 1123 ACGGCGCT---TTCTGCCGTTTCAGCAGCCGTTTCAGTCTGGCT---GGG 1166
BSNT_06243 543 ATACTTGGCAAGAAGTGCGAAAATGCCGGATAAAAGCAACGAAAAAGGAT 592
||..|||.|.|.| |||||| ...|||||| ||.| ||.||
RBAM_037730__ 1167 ATTATTGACGAAA----CGAAAA--AAAGATAAA--CACC--AATAG--- 1203
BSNT_06243 593 TCAATTGA 600
RBAM_037730__ 1203 -------- 1203
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