Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06192 and RBAM_037260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:39
# Commandline: needle
# -asequence dna-align/BSNT_06192___rocR.1.9828.seq
# -bsequence dna-align/RBAM_037260___rocR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06192___rocR-RBAM_037260___rocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06192___rocR-RBAM_037260___rocR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06192___rocR
# 2: RBAM_037260___rocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 1094/1430 (76.5%)
# Similarity: 1094/1430 (76.5%)
# Gaps: 70/1430 ( 4.9%)
# Score: 4192.5
#
#
#=======================================
BSNT_06192___ 1 ------------------GTGGTCAAAGACAGCGAATTCCTCACATTGGT 32
.||..||.|..|||||||||...||||.|.||
RBAM_037260__ 1 TTGAGAGGAGGAATTGACCTGCACACAACCAGCGAATTTTACACACTCGT 50
BSNT_06192___ 33 TTTTCAGAGCATTTTAGATGAAATCGATGTTGGCCTGCACGTGGTAGACG 82
.||.||.||||||.|.||.||.||.|||||.||..||||.|||||.||||
RBAM_037260__ 51 GTTACAAAGCATTCTGGAAGAGATTGATGTCGGGTTGCATGTGGTGGACG 100
BSNT_06192___ 83 AGCATGGAAACACAATCGTTTATAACAATAAAATGATGCAGATTGAAGAT 132
|..|.||.|.|||..||.||||.||.||.|||||||||||||||||||||
RBAM_037260__ 101 AAAAAGGCAGCACCGTCATTTACAATAAGAAAATGATGCAGATTGAAGAT 150
BSNT_06192___ 133 ATGGA-GAAGCATGACGTCTTGAATAAAAACCTGATGGATGTGTTTATGT 181
||||| ||| |..||||||.||.||||||||||||..|||||.|||||||
RBAM_037260__ 151 ATGGATGAA-CGGGACGTCCTGCATAAAAACCTGACTGATGTATTTATGT 199
BSNT_06192___ 182 TTTCAAAGCAGCAGGACAGCACACTGGTACAGGCTCTTCAGGAAGGCAAG 231
||||.||.|||||||||||.||.||.||.|||||.|||||.||||||||.
RBAM_037260__ 200 TTTCCAATCAGCAGGACAGTACGCTCGTTCAGGCCCTTCAAGAAGGCAAA 249
BSNT_06192___ 232 ACGATTAAAAACGTCAAACAGAGCTATTTCAATAATAAAGGCCAGGAAAT 281
|||||||||||.||.||.||.||||||||||||||.||||||||||||||
RBAM_037260__ 250 ACGATTAAAAATGTAAAGCAAAGCTATTTCAATAACAAAGGCCAGGAAAT 299
BSNT_06192___ 282 TACGACGATCAATCATACATATCCC-ATCGTCCAAGACGGCAAAATCAGG 330
.|||||||||||.||.||.| |||| ||.||.|||.|||||.|.||||.|
RBAM_037260__ 300 CACGACGATCAACCACACCT-TCCCGATTGTGCAAAACGGCGAGATCAAG 348
BSNT_06192___ 331 GGCGCTGTTGAAATTGCCAAGGATGTGACAAAGCTTGAACGGCTGATCAG 380
|||||.||.|||||.||||||||.||.||.|||||.||||||||||||||
RBAM_037260__ 349 GGCGCCGTGGAAATCGCCAAGGACGTCACCAAGCTCGAACGGCTGATCAG 398
BSNT_06192___ 381 GGAGAATATGAACAAAAAAGGCAGCACAAC--CTATACGTTTGACAGTAT 428
||||||.|||.|||..|||| |.||.||| |||.||||||||||||||
RBAM_037260__ 399 GGAGAACATGCACAGGAAAG--AACAGAACAGCTACACGTTTGACAGTAT 446
BSNT_06192___ 429 TCTCGGCACCAGTCCGGCCATTCAAGACGTCATCGAAAACGCCAAGCGGG 478
||||||||.|||.||||..||||..||.||||||||||||||.||.||||
RBAM_037260__ 447 TCTCGGCAACAGCCCGGTTATTCGGGAAGTCATCGAAAACGCAAAACGGG 496
BSNT_06192___ 479 CAACCCGTACGTCATCATCTGTCCTTCTCGCAGGCGAAACCGGCACGGGA 528
|||||||.||.||||||||.||.|||.|.||.|||||.||.||.|||||.
RBAM_037260__ 497 CAACCCGCACATCATCATCGGTGCTTTTGGCCGGCGAGACGGGAACGGGC 546
BSNT_06192___ 529 AAAGAACTGTTCGCGCAAAGTATCCATAATGGAAGCGATCGTTCTGGCGG 578
||.|||||||||||.|||||.||.||.||.||.|||.|.||.||.||||.
RBAM_037260__ 547 AAGGAACTGTTCGCCCAAAGCATTCACAACGGCAGCCAGCGCTCAGGCGC 596
BSNT_06192___ 579 CCCGTTTATTTCGCAAAACTGTGCGGCACTGCCAGACAGCCTTGTCGAAA 628
||||||.||.||.||||||||.||.||.|||||.||.|||||.|||||||
RBAM_037260__ 597 CCCGTTCATCTCACAAAACTGCGCCGCCCTGCCGGATAGCCTGGTCGAAA 646
BSNT_06192___ 629 GCATTTTGTTTGGGACGAAAAAAGGCGCGTTTACCGGCGCTGTCGACCAG 678
|.|||||.||.||.||||||||||||||.||||||||.||..||||||||
RBAM_037260__ 647 GTATTTTATTCGGCACGAAAAAAGGCGCCTTTACCGGAGCCATCGACCAG 696
BSNT_06192___ 679 CCCGGCCTGTTTGAACAAGCCCATGGCGGCACACTGCTGTTAGATGAAAT 728
||||||.|.|||||.||.||.||.||.|||||.|||||..|.|||||.||
RBAM_037260__ 697 CCCGGCTTATTTGAGCAGGCGCAGGGAGGCACCCTGCTCCTTGATGAGAT 746
BSNT_06192___ 729 CAACTCGCTAAATCTCAGCCTTCAGGCGAAGCTGCTGCGCGCCCTTCAAG 778
||||||.||.|||||||||||.|||||.||.|||||.|||||||||||.|
RBAM_037260__ 747 CAACTCTCTCAATCTCAGCCTGCAGGCAAAACTGCTCCGCGCCCTTCAGG 796
BSNT_06192___ 779 AACGGAAAATCAGGCGCATCGGTTCAACAAAGGATACACCGATTGACGTA 828
||..||||||||||||||||||.|||.|..||||.|.||||||||||||.
RBAM_037260__ 797 AAAAGAAAATCAGGCGCATCGGATCAGCTCAGGACAAACCGATTGACGTC 846
BSNT_06192___ 829 CGTATTATTGCCACGATGAATGAAGACCCAATTGAT----GCAATTGCAG 874
||.||.||.|||||||||||||||||||| ||| ||.|||.|||
RBAM_037260__ 847 CGCATCATCGCCACGATGAATGAAGACCC----GATCACCGCCATTTCAG 892
BSNT_06192___ 875 GCGAACGAATGCGGAAGGACTTGTATTATAGGCTGAGTGTCGTCACACTG 924
..||.||..||||.||.||.||.||.||..|..|.||.||.|||||.|||
RBAM_037260__ 893 AAGAGCGGCTGCGCAAAGATTTATACTACCGCTTAAGCGTTGTCACGCTG 942
BSNT_06192___ 925 ATCATCCCGCCGCTTCGGGAACGAAAAGAAGACATCTTGCTTCTCGCGTC 974
|||||.||.|||||.|||||.||.||.||.|||||..|||..||.|| |
RBAM_037260__ 943 ATCATTCCCCCGCTCCGGGAGCGCAAGGAGGACATTCTGCCACTGGC--C 990
BSNT_06192___ 975 GGAG--TTCATCCAGAAAAACAACCATCTGTTCCAAATGAATGTTGAACA 1022
|.|| ||.||||||||||||||.||.||||||||||||.||||.||...
RBAM_037260__ 991 GAAGTCTTTATCCAGAAAAACAATCACCTGTTCCAAATGCATGTCGATTC 1040
BSNT_06192___ 1023 CATCAGCGATGACGTGAAGCAATTTTTCCTTTCTTATGACTGGCCGGGAA 1072
.|||||.||.||.|||.|||.|||.|||.|....||||||||||||||.|
RBAM_037260__ 1041 GATCAGTGACGATGTGCAGCGATTCTTCTTGGAATATGACTGGCCGGGCA 1090
BSNT_06192___ 1073 ATATTCGCGAGCTTGAGCATATGATCGAAGGCGCAATGAATTTCATGACG 1122
|.||.|||||||||||.||||||||.||||||||.|||||.||.||||||
RBAM_037260__ 1091 ACATCCGCGAGCTTGAACATATGATTGAAGGCGCCATGAACTTTATGACG 1140
BSNT_06192___ 1123 GACGAGCAA--ACGATTACGGCTTCCCATCTGCCCTATCAATACCGCATG 1170
||.|| || |||||||||||..||||.|||||.||.||||||||.|||
RBAM_037260__ 1141 GATGA--AACGACGATTACGGCGGCCCACCTGCCTTACCAATACCGGATG 1188
BSNT_06192___ 1171 AAAATCAAGCCGGCTGACATC-----CCAGAGCCGGAAACACCAAGACA- 1214
||||||||.|||||||||| | |||.||||| |..|||| ||
RBAM_037260__ 1189 AAAATCAAACCGGCTGACA-CGGAAACCAAAGCCG----CCGCAAG-CAC 1232
BSNT_06192___ 1215 CCAGCCAGCCGCGGACTTAAAAGAAAAAATGGAAAGCTTCGAAAAATATG 1264
||||||.|.|.|.||.||||||||.||||||||||.||||||||||||..
RBAM_037260__ 1233 CCAGCCCGGCACCGATTTAAAAGACAAAATGGAAAACTTCGAAAAATACA 1282
BSNT_06192___ 1265 TGATAGAGAACGTGTTAAGAAAACACGGCCATAACATCTCGAAAGCTGCT 1314
||||.||.||..|..|.||||||||||||.|||||||.||.|||.|.||.
RBAM_037260__ 1283 TGATCGAAAAGATCCTGAGAAAACACGGCAATAACATATCCAAAACGGCA 1332
BSNT_06192___ 1315 CAGGAGCTTGGCATCAGCAGACAAAGCCTCCAATATCGGCTGAAGAAATT 1364
.|.|||||.||.|||||||||||.|||||.|||||.||.|||||.||||
RBAM_037260__ 1333 AACGAGCTCGGAATCAGCAGACAGAGCCTGCAATACCGCCTGAAAAAAT- 1381
BSNT_06192___ 1365 TTCTCACTC-GTCT--AACGAATAA----- 1386
|| |||| |.||.||.|
RBAM_037260__ 1382 -------TCGGTCTGGACCGGATGAAATGA 1404
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