Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06074 and RBAM_036560

See Amino acid alignment / Visit BSNT_06074 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:33
# Commandline: needle
#    -asequence dna-align/BSNT_06074___yxeB.1.9828.seq
#    -bsequence dna-align/RBAM_036560___yxeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06074___yxeB-RBAM_036560___yxeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06074___yxeB-RBAM_036560___yxeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06074___yxeB
# 2: RBAM_036560___yxeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 997
# Identity:     728/997 (73.0%)
# Similarity:   728/997 (73.0%)
# Gaps:          65/997 ( 6.5%)
# Score: 2630.0
# 
#
#=======================================

BSNT_06074___      1 ATGAAAAAGAACA--TATTGCTCGTGGGCATG---CTTGTGCTGCTTCTC     45
                     |||||.|  ||||  .||.|||..|.|||.||   |||.||||       
RBAM_036560__      1 ATGAAGA--AACAATCATGGCTGATCGGCCTGGCACTTCTGCT-------     41

BSNT_06074___     46 ATGTTTGTC------AGCGCTTGCAGCGGCACGGCTTCTAAAGGGAGCTC     89
                      ||||| ||      |||||||||||||||.||        |.|||...|
RBAM_036560__     42 -TGTTT-TCGCATTAAGCGCTTGCAGCGGCGCG--------AAGGAAAAC     81

BSNT_06074___     90 AAGCGATTCTGCTTC------CGAAAAAACAGAAATGAGAACATACAAAT    133
                     || ||..||.||.||      .|.|||.|||||.|||.|.|||||..|||
RBAM_036560__     82 AA-CGGATCGGCATCAGGCAAAGGAAAGACAGACATGCGTACATATGAAT    130

BSNT_06074___    134 CACCAAAAGGGAACGTCAACATTCCTGCACATCCGAAACGCATCGTCACT    183
                     ||.|||||||.||..|..||||.||.||||||||||||||.|||||||||
RBAM_036560__    131 CAACAAAAGGAAATATTGACATACCCGCACATCCGAAACGGATCGTCACT    180

BSNT_06074___    184 GATTTTTATGCCGGTGAATTGCTGTCTGTCGGGGCCAATGTGGTCGGCTC    233
                     ||.||||||||.|||||..|||||||.||.|..||.|||||.|||||..|
RBAM_036560__    181 GACTTTTATGCAGGTGAGCTGCTGTCCGTTGACGCAAATGTCGTCGGGGC    230

BSNT_06074___    234 AGGCTCATGGTCATTTGATAATCCGTTTTTAAAATCAAAGCTGAAAAATG    283
                     .|||||||||.|.||..|.|||||||||.|.|||..|.||||||||||..
RBAM_036560__    231 GGGCTCATGGGCTTTCAAAAATCCGTTTATCAAAAAACAGCTGAAAAACA    280

BSNT_06074___    284 TGAAGGATGTTGGTGATC----CAATAAGCGTTGAAAAAGTGATGGAGCT    329
                     ..|.|||..|.||..|||    ||||    ||.||.|||||||||.||||
RBAM_036560__    281 CCACGGACATCGGCAATCCCGTCAAT----GTGGAGAAAGTGATGCAGCT    326

BSNT_06074___    330 TCAGCCTGACTTAATTGTTGTCATGAATGAAGA-GAATGTTGATAAATTA    378
                     ..|||||||.|||||.||..|.|||||.||.|| .||| ..||.|||.||
RBAM_036560__    327 GAAGCCTGATTTAATCGTGCTGATGAAGGATGACCAAT-ACGAGAAACTA    375

BSNT_06074___    379 AAGAAAATCGCTCCGACTGTTGTCATACCTTATAACACAGCGAAAAACGT    428
                     ..|||||||||.|||||..|||||||.||||.||||||.||.||.||  |
RBAM_036560__    376 TCGAAAATCGCACCGACGATTGTCATTCCTTTTAACACCGCAAAGAA--T    423

BSNT_06074___    429 A--GAAGACACAGTCAGCATGTTCGGAGATATCGCCGGAGCGAAAGACAA    476
                     |  .||||.||.||||||.|.|||||.||.||.|||||.|||||.||.||
RBAM_036560__    424 ACGAAAGATACGGTCAGCCTATTCGGCGACATTGCCGGGGCGAAGGATAA    473

BSNT_06074___    477 AGCAAAATCCTTTATGGCTGACTTTAACAAAAAAGCGGAAGCAGCTAAGA    526
                     |||.|||..|||||||||.|||||.|||.|||||||.|||||...|.|.|
RBAM_036560__    474 AGCCAAAAGCTTTATGGCAGACTTCAACCAAAAAGCCGAAGCGAATCAAA    523

BSNT_06074___    527 AG-------AAAATTGCCGGCGTCATCGACAAAGATGCAACCTTCGGCAT    569
                     ||       ||||       |||.||||.||||||.|..||..|||||.|
RBAM_036560__    524 AGCGCCTCAAAAA-------CGTGATCGGCAAAGACGAGACAGTCGGCCT    566

BSNT_06074___    570 TTATGAAAACACAGACAAGGGCGAATTCTGGGTGTTCAATGACAATGGCG    619
                     ||||||||..||.||.||.||||||.|||||.|.||||||||||||..||
RBAM_036560__    567 TTATGAAACGACGGATAAAGGCGAAATCTGGATTTTCAATGACAATTCCG    616

BSNT_06074___    620 GACGCGGCGGCCAAGCTGTATACAATGCACTTGGGTTAAAAGCGCCTGAA    669
                     |.||||||||||||||.||.||.||.||.||.||.||.||||||||.|..
RBAM_036560__    617 GCCGCGGCGGCCAAGCCGTTTATAACGCGCTCGGATTGAAAGCGCCGGCC    666

BSNT_06074___    670 AAAATTGAGCAAGATGTCATCAAAAAAGGAGAGATGAAACAGCTCTCTCA    719
                     ||||||||..||||..||||.||||..||.|..|||||||||.|.||.||
RBAM_036560__    667 AAAATTGAAAAAGACATCATGAAAACGGGCGCCATGAAACAGGTTTCCCA    716

BSNT_06074___    720 AGAGGTTATTCCTGAGTATGCCGCAGATTATATGTTCATTACGGATTACA    769
                     ||||||.||.|||.|.|||||.||.|||||||||||||||||.|||||||
RBAM_036560__    717 AGAGGTCATCCCTCAATATGCGGCTGATTATATGTTCATTACCGATTACA    766

BSNT_06074___    770 ACCCGAAAGGCGAAAGCAAAACACTCGACAAGCTGGAGAATTCCTCCATT    819
                     |.|||||.||.||||||||||||.|.||....|||.|..||||.|||.||
RBAM_036560__    767 ATCCGAATGGAGAAAGCAAAACATTTGAGCGTCTGAAAGATTCATCCGTT    816

BSNT_06074___    820 TGGAAAAATCTTGACGCTGTTAAACATAATCGCGTGTTTATCAATGACTT    869
                     |||||||||||.||.||.||.|||.|.|||||.||.||||||||.||.||
RBAM_036560__    817 TGGAAAAATCTCGATGCCGTAAAAAACAATCGTGTCTTTATCAACGATTT    866

BSNT_06074___    870 TGACTCGTTCTACCCGTACGACCCGATTTCTGTCAGCAAACAGGTGGATA    919
                     ..||.|.|||||.||.||.|||||||||.|.||.|||||||||.||||||
RBAM_036560__    867 CAACACCTTCTATCCTTATGACCCGATTGCCGTAAGCAAACAGATGGATA    916

BSNT_06074___    920 TCATCACCGACATGCTGATCAAACGGGCCGAAGAAAATAAAAAATAA    966
                     ||||||||||||||||||||||||||||.||||||||||.|||||||
RBAM_036560__    917 TCATCACCGACATGCTGATCAAACGGGCTGAAGAAAATAGAAAATAA    963


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06074 and RBAM_036560

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
