Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05824 and RBAM_035310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:20
# Commandline: needle
# -asequence dna-align/BSNT_05824.1.9828.seq
# -bsequence dna-align/RBAM_035310___ywcI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05824-RBAM_035310___ywcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05824-RBAM_035310___ywcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05824
# 2: RBAM_035310___ywcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 216/454 (47.6%)
# Similarity: 216/454 (47.6%)
# Gaps: 188/454 (41.4%)
# Score: 618.5
#
#
#=======================================
BSNT_05824 1 TTGCGAGAAAAGAAATCGGCCGTCTTTTCTTGCGGGCTGCGGCTGAGAAA 50
RBAM_035310__ 0 -------------------------------------------------- 0
BSNT_05824 51 ACGGGCTGCTAAAAAGGCTGCCTGCCAAAAAGAAGCGGAGGGATGTTTTT 100
RBAM_035310__ 0 -------------------------------------------------- 0
BSNT_05824 101 CTATGAAACGTTTGCTTGTATCTTTACGGGTGTGGATGGTCTTTTTGATG 150
||||||||||||||.|||||||||||||||||||||||||||.|||||
RBAM_035310__ 1 --ATGAAACGTTTGCTAGTATCTTTACGGGTGTGGATGGTCTTTCTGATG 48
BSNT_05824 151 AACTGGGTGACGCCGG---ACAGAAAAACTGC---GGCTGCCGCGGTCTA 194
||||||.||.|||||| ||.|||.|..|.| .||||||| |.
RBAM_035310__ 49 AACTGGATGGCGCCGGGTAACGGAAGATATCCATTAGCTGCCG-----TG 93
BSNT_05824 195 TTCGG---CTCAGCGTACATACCA-AAGAAA--------GGCGGCTGTGC 232
|.||| |..|||| .|.||.|| |||||| |.||||||
RBAM_035310__ 94 TACGGAAACCAAGCG-GCTTATCATAAGAAAGCGAAGCGGACGGCTG--- 139
BSNT_05824 233 AGGCCGCAGGACTCGTTTCGTTTTATGAG---TGGCGGAT----GGCTGT 275
||.|| .||||| |||.|||| ||.|.||| ||.|.|
RBAM_035310__ 140 --------GGGCT-TTTTCG-TTTGTGAGCCATGTCCGATCGGCGGATTT 179
BSNT_05824 276 GAATGAGGAAGAAAAGCA-GAAAGCGAAAG-CCGCCGC--GCTTTATAAA 321
||..||.||| | ||||.|| | ||||.|| |||..|||||
RBAM_035310__ 180 GACCGATGAA-------ACGAAATCG---GCCCGCGGCAGGCTGGATAAA 219
BSNT_05824 322 AGAAGATGTTTGCAAGCCTT--CAAGGAATCGCCAAAGCAGGAGAGAGCG 369
|...||||..|||..| || |||.||||.|||.||.|.||||.|.|||
RBAM_035310__ 220 AACCGATGGATGCCTG--TTCGCAAAGAATTGCCGAAACGGGAGCGCGCG 267
BSNT_05824 370 GG-CCCGTATCTTTACATGGCGGTC-----AAAAGGAGG----------- 402
|| ||.|.|.||||||| || ||||.||||
RBAM_035310__ 268 GGTCCGGCAACTTTACA------TCATATGAAAAAGAGGGTACAATCCCA 311
BSNT_05824 403 -TAA 405
|||
RBAM_035310__ 312 CTAA 315
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