Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05459 and RBAM_032920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05459___gerBA.1.9828.seq
# -bsequence dna-align/RBAM_032920___gerBA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05459___gerBA-RBAM_032920___gerBA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05459___gerBA-RBAM_032920___gerBA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05459___gerBA
# 2: RBAM_032920___gerBA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1514
# Identity: 1046/1514 (69.1%)
# Similarity: 1046/1514 (69.1%)
# Gaps: 124/1514 ( 8.2%)
# Score: 3464.5
#
#
#=======================================
BSNT_05459___ 1 ----------ATGCAAATCGACTCTGATCTCCAACGCAATATAGAGACAT 40
||| |.||.||| .|||| |.||.|
RBAM_032920__ 1 GTGACGATACATG----------CGGAGCTC---GGCAA-----AAACCT 32
BSNT_05459___ 41 TGAA------AAAAAA--GTTGGGACAAAACGACGATATCATGTTTTATA 82
|||| |||||| |||.||.||||.|||.||.||.|||||||||.
RBAM_032920__ 33 TGAAGTGCTGAAAAAACGGTTCGGCCAAAGCGATGACATGATGTTTTATT 82
BSNT_05459___ 83 CGTTTTCATTTGGAGGCAGCA-----GACAGAAAGCGTGCCTACTGTATA 127
|||||.|.|..|||..|.||| ||| ||.||.||..|.||||
RBAM_032920__ 83 CGTTTACGTACGGAAACGGCAAATGTGAC-----GCCTGTCTTATCTATA 127
BSNT_05459___ 128 TTGACGGTTTGACAGAAAATAAACTTCTGGCGCAATACGTCATTTCTCCA 177
|.|||||..||||.||.|||.||.|.||.|||.||||..|.|||||.||.
RBAM_032920__ 128 TAGACGGACTGACCGACAATCAATTGCTTGCGGAATATATTATTTCGCCC 177
BSNT_05459___ 178 TTACAAAAAGAAGCGTTAGAC---AAAAAAGAG-----GGCTTGATTGAA 219
.|.| |.|||...|.| .|..||||| ||| ||||
RBAM_032920__ 178 GTGC------AGGCGGCCGCCCGGCATCAAGAGGAACCGGC-----TGAA 216
BSNT_05459___ 220 GAT-------TTATCCGCTTTCTTTTTCGGCTATCATCACAATGTA---- 258
|| |.|||| .|||.|||||||||||.||| ||
RBAM_032920__ 217 -ATACCGCCGTCATCC---ATCTCTTTCGGCTATCGTCA-----TACCCG 257
BSNT_05459___ 259 -ATCTCTACTATAAAGGAAATAC-----AGCAG-CTTATTTTTTCCGG-A 300
.|.|||.|..|.|||| || .|||| | |||||.||||| |
RBAM_032920__ 258 GCTTTCTTCACTTAAGG----ACGCGGAGGCAGAC--ATTTTCTCCGGCA 301
BSNT_05459___ 301 CATGCCATCTTGCTGGCCGATGGATACAGCGGAGG----GCTGGCTTTTG 346
.|| |..|.||||||||.||.|||| .||||| .||..|.||||
RBAM_032920__ 302 AAT-CGGTTTTGCTGGCGGAGGGAT----GGGAGGAAGCCCTTTCGTTTG 346
BSNT_05459___ 347 ATACGAAAACATTCATGACGCGCGCCTTTGAAGAACCTTCCTCTGAAATC 396
|.|||.|||||||.|..|.|||.|...||||||||||.||.||.|||.|.
RBAM_032920__ 347 AGACGGAAACATTTAAAATGCGTGATATTGAAGAACCGTCTTCAGAAGTG 396
BSNT_05459___ 397 GTAGAACGCGGTCCGAAGATTGGCTTTATTGAAAATCTCCGGACAAACAC 446
.|.|||||.||.||||.|||.||.|||.|.|||||.||.|||||.|||||
RBAM_032920__ 397 CTTGAACGGGGGCCGAGGATAGGTTTTGTCGAAAAGCTTCGGACGAACAC 446
BSNT_05459___ 447 GGCGCTTTTACGAGAGCGGACGAGTGACCCTAATCTCATCATAAAAGAAA 496
|||||||||.||.||||.|.|..||||.||.||.|||...||.|||||.|
RBAM_032920__ 447 GGCGCTTTTGCGCGAGCAGTCCGGTGATCCCAACCTCCAGATCAAAGAGA 496
BSNT_05459___ 497 TGACGATAGGCAAAAGGACAAAAAAAAAGATAGCTGTCGCATATATTCAG 546
|.||..|.|||.||.||||||||||...|||.||.||.||.||.||||.|
RBAM_032920__ 497 TCACACTCGGCGAACGGACAAAAAAGCGGATTGCCGTTGCCTACATTCGG 546
BSNT_05459___ 547 GATATTGCCCCTGATTATGTCGTAAAAGAAGTGTTTAAACGCCTAAAATC 596
|||||||||||||||.||||.||||||||||||.|.|||.|.||..|.||
RBAM_032920__ 547 GATATTGCCCCTGATGATGTTGTAAAAGAAGTGATGAAAAGACTGGATTC 596
BSNT_05459___ 597 CATCATAACAGATGATTTGCCGGAATCAGGCACACTTGAGCAGCTCATTG 646
.||||..|..|||||..|.|||||||||||..|..||||.|||||.||||
RBAM_032920__ 597 GATCACCATTGATGACATTCCGGAATCAGGAGCGATTGAACAGCTTATTG 646
BSNT_05459___ 647 AAGATGAAC-CTTTTTCGATCTTTCCGACGATCTTAAGTACAGAGCGTCC 695
||||| ||| |.|.|||.||.||.|||||..||||.|..||.||.||.||
RBAM_032920__ 647 AAGAT-AACACGTATTCTATTTTCCCGACCGTCTTGACGACCGAACGGCC 695
BSNT_05459___ 696 AGATCGTGT--AGAAAGCTCATTGTTGGAAGGCCGGGTTTCCATTTTGGT 743
.||.||.|| .|...|||| |.||||||||..|||||||||||.|.||
RBAM_032920__ 696 CGACCGGGTTATGGGCGCTC--TTTTGGAAGGAAGGGTTTCCATTCTTGT 743
BSNT_05459___ 744 GGATGGCACGCCGTTTGCACTCGTTGTCCCCGCAACGCTTGATGAATTTA 793
.||.||.|||||.|||.|.||..|.||.||.||.||..||||||||||||
RBAM_032920__ 744 AGACGGAACGCCTTTTACCCTTTTGGTGCCGGCTACCGTTGATGAATTTA 793
BSNT_05459___ 794 TTCATTCACCGGATGATTACAGCCAGCGCTGGATTACAATGTCACTTATT 843
|.||.||.||.||.|||||.|..|||||.|||.||.| .||.||.| ||
RBAM_032920__ 794 TCCACTCCCCTGACGATTATAATCAGCGGTGGGTTCC--GGTTACCT-TT 840
BSNT_05459___ 844 C---GTTTGCTTCGTTATTCCAGCATCCTGATTACCATTTATTTGCCGGG 890
| |..|||||||.|||.|..||||..|.||.||.||||||||.||.||
RBAM_032920__ 841 CTCAGGCTGCTTCGGTATACATGCATTTTAATCACGATTTATTTACCCGG 890
BSNT_05459___ 891 CTTATATATTTCTCTCGTTTCCTTCCATACGGGGCTTTTGCCGACGAGAA 940
|.|.||.||.||.||||||.|.||.||.||||||||||||||||||||||
RBAM_032920__ 891 CCTTTACATATCGCTCGTTACGTTTCACACGGGGCTTTTGCCGACGAGAA 940
BSNT_05459___ 941 TGGCTATTTCAATTGCAGGCAGCAGGCTGAATGTGCCCTTTCCGCCTTTT 990
||||..||.|.|||||.||.|||||..|||||||.||.||.||.||||||
RBAM_032920__ 941 TGGCGGTTACGATTGCCGGGAGCAGATTGAATGTCCCGTTCCCCCCTTTT 990
BSNT_05459___ 991 GTTGAAGCCTTTATTATGATATTTACGATAGAACTGATCCGGGAAGCCGG 1040
||||||||.|||||.|||||.||||||||.||..|||||.|.||||||||
RBAM_032920__ 991 GTTGAAGCGTTTATCATGATTTTTACGATTGAGATGATCAGAGAAGCCGG 1040
BSNT_05459___ 1041 TTTACGGCTGCCAAAGCCGATCGGACAGACGATTGGGCTTATTGGAGGCG 1090
..|..|||||||.||||||||||||||||||||.||.||.||.|||||||
RBAM_032920__ 1041 ACTCAGGCTGCCGAAGCCGATCGGACAGACGATCGGCCTGATCGGAGGCG 1090
BSNT_05459___ 1091 TTGTCATCGGACAGGCAGCTGTGCAGGCGCAAATTGTCAGCGCACTGATG 1140
|.||.|||||.|||||.||.||.||||||.|.||.||||||||..|||||
RBAM_032920__ 1091 TAGTGATCGGGCAGGCCGCCGTTCAGGCGAACATCGTCAGCGCGATGATG 1140
BSNT_05459___ 1141 GTCATTGTCGTTTCCGTTACGGCATTGGCGTCCTTTACCGTTCCTTCATA 1190
|||||||||||.|||||||||||||||||.||.|||||.|..||.||.||
RBAM_032920__ 1141 GTCATTGTCGTATCCGTTACGGCATTGGCTTCTTTTACGGCGCCCTCCTA 1190
BSNT_05459___ 1191 CGCCTTTAACTTTCCGCTGCGGATTATTCGTATCGCAGCAATGATAAGTG 1240
.||.||.||.|||||||||.||.|.||.|||||.....||||||| ..||
RBAM_032920__ 1191 TGCGTTCAATTTTCCGCTGAGGCTCATCCGTATTTTTTCAATGAT-TCTG 1239
BSNT_05459___ 1241 -CAGCTGTATTGGGCATGTATGGCGTCATCATGGTCTTTCTGTTAGTAAT 1289
|.||..|.||.||..|.||.||..|.||||||..||.||||.|.||.||
RBAM_032920__ 1240 TCGGCGATTTTAGGTTTATACGGACTGATCATGTGCTATCTGCTTGTCAT 1289
BSNT_05459___ 1290 TGGCCATTTAATGCGTTTGAAAAGCTTTGGCCAGGATTACATTATTCCGA 1339
.||||||.|.|||||..||||||||||.||.|||||.||..|||||||||
RBAM_032920__ 1290 CGGCCATCTGATGCGCCTGAAAAGCTTCGGTCAGGACTATCTTATTCCGA 1339
BSNT_05459___ 1340 TAATGGCACAGCCCGGACAAGATTTGAAAGACACGATTATTCGCGTTCCC 1389
|.|||||.|||||.||.|||||.||.|||||.|||||..|..|..|.||.
RBAM_032920__ 1340 TCATGGCGCAGCCTGGCCAAGACTTAAAAGATACGATCGTCAGACTGCCG 1389
BSNT_05459___ 1390 AC-CCTATTTTTAAAAAGAAGACCTACCCGCAAAGGCACAAAAGATAAAA 1438
|| |||.||||.||||| |.|.||.|||.|.||||..||.||||||||||
RBAM_032920__ 1390 ACGCCTCTTTTGAAAAA-ACGGCCGACCAGAAAAGAGACGAAAGATAAAA 1438
BSNT_05459___ 1439 TCAGACAAAGGTGA 1452
|||..|||||||||
RBAM_032920__ 1439 TCAAGCAAAGGTGA 1452
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