Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05396 and RBAM_032660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05396___yvyE.1.9828.seq
# -bsequence dna-align/RBAM_032660___yvyE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05396___yvyE-RBAM_032660___yvyE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05396___yvyE-RBAM_032660___yvyE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05396___yvyE
# 2: RBAM_032660___yvyE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity: 499/670 (74.5%)
# Similarity: 499/670 (74.5%)
# Gaps: 38/670 ( 5.7%)
# Score: 1860.5
#
#
#=======================================
BSNT_05396___ 1 ATGCTGCACAGCTATTTTACTGTGAAAGAAGCAGGAGAACACGAGATTGT 50
|||||||||||||||||.||.||.||||||.|.||.|||||.||||||||
RBAM_032660__ 1 ATGCTGCACAGCTATTTAACAGTTAAAGAAACGGGTGAACATGAGATTGT 50
BSNT_05396___ 51 TATAGAAAAATCGCGTTTTATCTGTCATTTAAGCCGTGTTTCTACCGAAC 100
.||.|||||||||||||||||||||||..|.|||||||.|.||.|.|||.
RBAM_032660__ 51 GATTGAAAAATCGCGTTTTATCTGTCACCTGAGCCGTGCTGCTTCTGAAG 100
BSNT_05396___ 101 AAGAGGCACAGGAATTTATACAGAAAATAAAGAAACAGCACTGGAATGCG 150
|.||.||.||||||||||||||.||.|||||.||||||||||||||||||
RBAM_032660__ 101 AGGAAGCGCAGGAATTTATACAAAAGATAAAAAAACAGCACTGGAATGCG 150
BSNT_05396___ 151 ACTCATAATTGCTCGGCTTATGTTATTGGCGAGAATGATCATATCCAAAA 200
||||||||.|||||.||||||.|.||.|||||.|..||.|||||.|||||
RBAM_032660__ 151 ACTCATAACTGCTCAGCTTATCTGATCGGCGAAACCGACCATATACAAAA 200
BSNT_05396___ 201 AGCCAATGATGACGGGGAACCAAGCGGTACAGCGGGAGTGCCGATGCTCG 250
.||.|||||||||||.|||||||||||.|||||.||.||.||.|||||.|
RBAM_032660__ 201 GGCGAATGATGACGGAGAACCAAGCGGCACAGCCGGCGTCCCCATGCTGG 250
BSNT_05396___ 251 AGGTTTTAAAGAAACGCAGACTGAAGGATACTTGCGCCGTCGTTACACGC 300
|.||..|.||.||||||.|.|||||.|||||.|||||.||.|||||.||.
RBAM_032660__ 251 AAGTGCTGAAAAAACGCGGTCTGAAAGATACCTGCGCGGTGGTTACCCGG 300
BSNT_05396___ 301 TACTTCGGAGGCATTAAGCTTGGTGCTGGCGGATTAATTCGCGCTTATGG 350
||.|||||.||.||.|||||.|||||.||||||||.|||||.||.|||||
RBAM_032660__ 301 TATTTCGGCGGAATAAAGCTCGGTGCAGGCGGATTGATTCGTGCATATGG 350
BSNT_05396___ 351 GAAATCAGTGTCTGAAGGATTAAATCATATAGGTGTTGTAGAACGGAAGC 400
|||.||||||||||||||.||||||||||||||.|||...||.|||||||
RBAM_032660__ 351 GAAGTCAGTGTCTGAAGGCTTAAATCATATAGGAGTTACGGAGCGGAAGC 400
BSNT_05396___ 401 TTATGCGAATCATGCATACTTCTGCAGATTACACATGGCTTGGCAAGATT 450
|.|||||.||.||||||||.||.||.|||||.||.|||||.||||||||.
RBAM_032660__ 401 TGATGCGGATTATGCATACATCAGCGGATTATACGTGGCTCGGCAAGATA 450
BSNT_05396___ 451 GAAAATGAATTAAGGGAGTCACAATTTCTGTTAAAGGAAATCCATTATGC 500
||.||.|||.|.||.||.|||...|||.|..|.||.||.|||||||||||
RBAM_032660__ 451 GAGAACGAACTGAGAGAATCAGTTTTTTTACTGAAAGATATCCATTATGC 500
BSNT_05396___ 501 GGAAAACGTTGAATTTGAAGTATACGT------AAATGAGA-AAAGA--A 541
|||..|.||.|||||||||...||||| ||| ||| ||||| |
RBAM_032660__ 501 GGATCATGTCGAATTTGAAACGTACGTTGAAGAAAA--AGACAAAGACGA 548
BSNT_05396___ 542 TTTCAGAATACTCTCAATGGATTTTAAATTTAACGAATGGATCA--TGTT 589
.||.|.|| |||||||...|.|..|.|||||.|| || .||.
RBAM_032660__ 549 GTTTATAA-------AATGGATGACAGAGCTGACGAACGG--CAAGAGTA 589
BSNT_05396___ 590 ATACTAAAAAGGGTATTTTGATATATCTTGAAAAACAAGTTGAAAATCA- 638
|.|.||.|.||||.....|||..|||.|.||||.|.|.| |||
RBAM_032660__ 590 AGAATACAGAGGGAGAACTGACGTATTTAGAAACAGACG-------TCAG 632
BSNT_05396___ 639 ----AAAGGAGAATAAATGA 654
||||||||.|||
RBAM_032660__ 633 CCCTAAAGGAGACTAA---- 648
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