Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05395 and RBAM_032650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05395___degS.1.9828.seq
# -bsequence dna-align/RBAM_032650___degS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05395___degS-RBAM_032650___degS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05395___degS-RBAM_032650___degS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05395___degS
# 2: RBAM_032650___degS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 949/1164 (81.5%)
# Similarity: 949/1164 (81.5%)
# Gaps: 6/1164 ( 0.5%)
# Score: 3909.0
#
#
#=======================================
BSNT_05395___ 1 ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAA 50
|||||||||.|.||||||||.||||||||..||||||||||..|.|||||
RBAM_032650__ 1 ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAA 50
BSNT_05395___ 51 GATGCTGAAAACCGTTGACGGGAGCAAGGACGAAGTTTTTCAAATCGGGG 100
.||||||||||||||.|||||||||||||||||.||||||||||||||.|
RBAM_032650__ 51 AATGCTGAAAACCGTGGACGGGAGCAAGGACGAGGTTTTTCAAATCGGAG 100
BSNT_05395___ 101 AGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATT 150
|||||||.||||||||.|||||.|||||||||||||||||.|||||.||.
RBAM_032650__ 101 AGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATC 150
BSNT_05395___ 151 AAACAGCAGGTGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCA 200
|||||||||||.||.|||||.||.|||||.|||||.|||||||||||.||
RBAM_032650__ 151 AAACAGCAGGTCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCA 200
BSNT_05395___ 201 AACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGTAATTTTCATA 250
.||.||.||.||..|||||||.||.||.||.||.|||.|.|||||.||||
RBAM_032650__ 201 TACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGAAATTTCCATA 250
BSNT_05395___ 251 GATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTG 300
..|||||.|||||.|||||.|||||.||.||||||||.||.||.||.||.
RBAM_032650__ 251 AGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTT 300
BSNT_05395___ 301 CAGGTAGAATTGACGATGATCCAGCAGCGTGAGAAGCAATTGCGCGAACG 350
||.||.|||.|||||||||||||.||||||||.|||||..||||.||.||
RBAM_032650__ 301 CAAGTGGAACTGACGATGATCCAACAGCGTGAAAAGCAGCTGCGGGAGCG 350
BSNT_05395___ 351 GCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC 400
..||||.|||||.||.|||.|..|..|.||||||||||||||||||||.|
RBAM_032650__ 351 CAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC 400
BSNT_05395___ 401 GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAAT 450
|||||||||||||.||.||||||||.||.||.||.||.||.|||.|||||
RBAM_032650__ 401 GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAAT 450
BSNT_05395___ 451 CAGGATTTGCGCGAAGTTGGACTGCTTCTTGCTGATGCTCAGGCAAAACA 500
||.||..|.|||.||||.||.||.||||||||.|||||.|||||.|||||
RBAM_032650__ 451 CAAGACCTTCGCCAAGTAGGGCTTCTTCTTGCCGATGCGCAGGCTAAACA 500
BSNT_05395___ 501 GGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAG 550
.||||||||.|||||.||.|||||.||.||.||.|||||..|||||||||
RBAM_032650__ 501 AGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAG 550
BSNT_05395___ 551 TCTCAAGAGAAATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATG 600
|.||.||||||||.||||||||.|||||.|||||||||||.|||||.|||
RBAM_032650__ 551 TTTCCAGAGAAATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATG 600
BSNT_05395___ 601 ATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGGGCGCAGAGGA 650
|||||||||||||||||.||.|||||.|||||.|||||.|||.|.|||||
RBAM_032650__ 601 ATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCGGCACGGAGGA 650
BSNT_05395___ 651 CGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTT 700
||||||.||.|||||.|.||||||.||.||.|||||.|||||||||||||
RBAM_032650__ 651 CGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTT 700
BSNT_05395___ 701 ACGAAGTGAGAAGGATTATATATGATTTAAGACCGATGGCCCTTGATGAC 750
|||||||.||||||||||||||||||||||||||||||||..|.||.||.
RBAM_032650__ 701 ACGAAGTCAGAAGGATTATATATGATTTAAGACCGATGGCATTGGACGAT 750
BSNT_05395___ 751 CTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA 800
||.||.||||||||.||..|.|||||||||||.||||||||.||.|||||
RBAM_032650__ 751 CTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA 800
BSNT_05395___ 801 TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATC 850
.|||||.|||||.|||||||||||||||||.||.|||||.||.|||.|.|
RBAM_032650__ 801 CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACC 850
BSNT_05395___ 851 AGAGGCTAGCGCCTCAGTTTGAGGTTGCGCTCTTCAGGCTCGCACAGGAA 900
|.|||||.||.||.||.|||||.||.|||||.|||.|.|||||.||||||
RBAM_032650__ 851 AAAGGCTTGCCCCGCAATTTGAAGTGGCGCTTTTCCGTCTCGCTCAGGAA 900
BSNT_05395___ 901 GCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAA 950
||.||..|.|||||.||.||||||||.|||||.||.|||||||||||.||
RBAM_032650__ 901 GCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAA 950
BSNT_05395___ 951 AGTTGAGATCACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTA 1000
|||.||..|.||....||||||||..||.|.||.||.||.||.|||||.|
RBAM_032650__ 951 AGTGGAAGTAACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAA 1000
BSNT_05395___ 1001 AAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAAATCATTCGGC 1050
||||.||.||..|.|||||.||.|||.|.|||||||||||.|||||||||
RBAM_032650__ 1001 AAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAAGTCATTCGGC 1050
BSNT_05395___ 1051 TTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAAT 1100
||||||||.||||||||||||||||||.|..|.|||||||||||.||.||
RBAM_032650__ 1051 TTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGAT 1100
BSNT_05395___ 1101 AGATTCGAAAATAGGTCTTGGGACATTTATTATGATTAAGGTTCCGTTAT 1150
|||.||.|||||||||||||||||||||||.|||||||||||||||||||
RBAM_032650__ 1101 AGACTCTAAAATAGGTCTTGGGACATTTATCATGATTAAGGTTCCGTTAT 1150
BSNT_05395___ 1151 CTCTTTGA------ 1158
||||..|.
RBAM_032650__ 1151 CTCTCGGCCTATAA 1164
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