Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05143 and RBAM_031370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05143___yvbW.1.9828.seq
# -bsequence dna-align/RBAM_031370___yvbW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05143___yvbW-RBAM_031370___yvbW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05143___yvbW-RBAM_031370___yvbW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05143___yvbW
# 2: RBAM_031370___yvbW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1358
# Identity: 633/1358 (46.6%)
# Similarity: 633/1358 (46.6%)
# Gaps: 580/1358 (42.7%)
# Score: 2438.5
#
#
#=======================================
BSNT_05143___ 1 ATGAAAAACGACAATCAAACGTTAAAACGCACGATGACGTCCCGCCATAT 50
|||.||||.|||||.||||||||||||||.||||||.|||||.|.||.||
RBAM_031370__ 1 ATGGAAAAGGACAAGCAAACGTTAAAACGGACGATGTCGTCCAGACACAT 50
BSNT_05143___ 51 TATGATGATGGCGCTGGGCGGAGCAATCGGCGCAGGTTTATTTAAGGGGA 100
|||||||||||||||.||.||.||||||||.||.||..|.|||||.||.|
RBAM_031370__ 51 TATGATGATGGCGCTTGGAGGCGCAATCGGGGCCGGGCTCTTTAAAGGCA 100
BSNT_05143___ 101 GCAGCTCAGCGATCGATGTGGCAGGGCCATCTGTCATTATCGCATACCTG 150
|||||.|.|||||.||||..||.|||||.||.||..|..|.||.|||||.
RBAM_031370__ 101 GCAGCACGGCGATTGATGAAGCGGGGCCGTCCGTGCTGCTGGCCTACCTC 150
BSNT_05143___ 151 CTCGGCGGGATTATTTTGCTGTTTATTATGCAGGGACTGGCGGAAATGGC 200
||||||||.||.|||.|||||||||||||||||||.|||||.||||||||
RBAM_031370__ 151 CTCGGCGGAATCATTCTGCTGTTTATTATGCAGGGGCTGGCCGAAATGGC 200
BSNT_05143___ 201 TGTTCGAAACCGTAAC--GCCAGAACCTTCCGTGATCTTGTCCAGCAG-G 247
|||..||||| .||| ||.||.||.|||||||||.|.||.|||||| .
RBAM_031370__ 201 TGTCAGAAAC--AAACATGCAAGGACGTTCCGTGATTTGGTTCAGCAGTC 248
BSNT_05143___ 248 TATTGGGAAAT--TACGCCGCTTACTTTTTGGACTGGATCTACTGGAAAA 295
|.|.||| | |||||.||.||||||||.|||||||||||.|||||||
RBAM_031370__ 249 TCTCGGG---TCGTACGCTGCATACTTTTTAGACTGGATCTATTGGAAAA 295
BSNT_05143___ 296 TGTGGGTGCTTAACATTGCGGCTGAAGCTGTTGTAGCTGCGATTTTCATT 345
||||||||||.||.|||||.|||||.||.||.|||||.||.|||||||||
RBAM_031370__ 296 TGTGGGTGCTCAATATTGCCGCTGAGGCGGTCGTAGCCGCCATTTTCATT 345
BSNT_05143___ 346 CAATATTGGCTGCCGGGCTGCCCGATCTGGGTGTTGGCATTAGGA--ATT 393
||||||||||||||||..||.|||||.|||.|.|||||.|| || |||
RBAM_031370__ 346 CAATATTGGCTGCCGGAATGTCCGATATGGATATTGGCTTT--GATCATT 393
BSNT_05143___ 394 TCTCTTATCGTCACGATTGTAAACTTGCTTTCTGTTAAAATCTTCGCCGA 443
||..||.|.||.|||.|.||||||.||||||||||.|||.|.||.|||||
RBAM_031370__ 394 TCCATTGTGGTGACGGTCGTAAACATGCTTTCTGTGAAACTGTTTGCCGA 443
BSNT_05143___ 444 AACTGAATATTGGCTGGCAATGATCAAGATTACCGTTATTATTATCTTTA 493
.||.||.||.|||||.||..|.||.||.|||||.||.|||.|.|||||||
RBAM_031370__ 444 GACGGAGTACTGGCTCGCGCTCATTAAAATTACAGTGATTGTCATCTTTA 493
BSNT_05143___ 494 TTATTCT--GGGATTGCTGCTCTTATTTGTATCATTCGGTGATCATACAG 541
|| ||.| |||||| |||||.||||||.|.||||||||..||||.||.|
RBAM_031370__ 494 TT-TTATGCGGGATT-CTGCTATTATTTTTCTCATTCGGCAATCACACGG 541
BSNT_05143___ 542 CATCCGGATTTTCCAACCTGACAGACCACGGCGGATTTTTCCCGCACG-- 589
|..|.||..|.||..|..|.||.||.|||||.||.|||||||||||.|
RBAM_031370__ 542 CGCCGGGGCTGTCTCATTTAACGGATCACGGAGGGTTTTTCCCGCATGGA 591
BSNT_05143___ 590 GCGGCACAGGGCTG--ATCACGGCGATGCTTGTCGTCATCTACTCTTACG 637
|||| |||.|| ||.|||||||||||.|||||.||||||||.||||
RBAM_031370__ 592 GCGG----GGGGTGTCATTACGGCGATGCTCGTCGTGATCTACTCATACG 637
BSNT_05143___ 638 GCGGTAC-AGAAATTATCGGTGTAACGCTTGCAGAGACAAAAAATCCGGA 686
||||.|| .|||||.|||||.||.|||||.||.|||||||||||.||.||
RBAM_031370__ 638 GCGGAACGGGAAATCATCGGCGTCACGCTGGCGGAGACAAAAAACCCCGA 687
BSNT_05143___ 687 AAAGGTTGTCCCGAAAGCTGTCCGCAGCACACTGACACGGATTGTCGCGT 736
||||||..||||||||||||||||.|||||..|.||.|||||||||||.|
RBAM_031370__ 688 AAAGGTGATCCCGAAAGCTGTCCGAAGCACGTTAACGCGGATTGTCGCTT 737
BSNT_05143___ 737 TTTACCTGCTGCCGTTTTTCATCATCGTCAGCCTGATTCCATGGAACCAA 786
|||||.||||||||||||||||||||||||||||||||||.|||||.|||
RBAM_031370__ 738 TTTACTTGCTGCCGTTTTTCATCATCGTCAGCCTGATTCCTTGGAATCAA 787
BSNT_05143___ 787 GTCAATTCGGTTCCGGAAAGTCCTTTCGTGATGGTCTTTAAAATGGTAGG 836
||.||
RBAM_031370__ 788 GTTAA--------------------------------------------- 792
BSNT_05143___ 837 CATTCCGGGCGCGGACCATATCATGAATGCAGTCATCCTGCTGGCGATCA 886
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 887 TTTCTTCTATGAATTCAGGTTTATACGGATCATCACGCATTTTGTATACA 936
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 937 CAGGCAAGTGACGGAAGGCTTCCAAAGGTCTTCTCGAAGCTTTCATCGAA 986
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 987 AAACGTACCGATGTTTGCGATTCTGATGTGCACTTCTTCTCTCTATATTG 1036
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1037 GCGTATTGATTTCTCTGTTCGCAGGAAGCCAAACATTTAATTATTTAATG 1086
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1087 GGATCATTGGGATATACCGTTTTATTCATTTGGCTGATCATCGGATTCGC 1136
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1137 TCATTTAAAATCGAGAAAACAGCAAACGGAAACACCGGCCTATTATGTAA 1186
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1187 AATGGTTCCCGTACACGACATGGTTTGCGATTGTGGCATTACTCGCCATT 1236
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1237 CTGATCGGAGTCATCATGACAACATCAATTGTCATTACCGGCATTACTGC 1286
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1287 GGCGATCTACCTTTTGATTACAGTTGCATATTTGGTCAAAGGACGCAAGC 1336
RBAM_031370__ 792 -------------------------------------------------- 792
BSNT_05143___ 1337 ATCAGTAA 1344
RBAM_031370__ 792 -------- 792
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