Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05140 and RBAM_031350
See
Amino acid alignment /
Visit
BSNT_05140 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05140___yvbU.1.9828.seq
# -bsequence dna-align/RBAM_031350___yvbU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05140___yvbU-RBAM_031350___yvbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05140___yvbU-RBAM_031350___yvbU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05140___yvbU
# 2: RBAM_031350___yvbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 899
# Identity: 672/899 (74.7%)
# Similarity: 672/899 (74.7%)
# Gaps: 40/899 ( 4.4%)
# Score: 2506.5
#
#
#=======================================
BSNT_05140___ 1 ATGACCATTACACAATTAAAGGTTTTTGTGAAAATAGCTGAAACGGGAAG 50
|||||.|||||||||.|...|||||||||..||||.||||||||||||||
RBAM_031350__ 1 ATGACGATTACACAACTGCGGGTTTTTGTTCAAATCGCTGAAACGGGAAG 50
BSNT_05140___ 51 CTTTACAAAAGCGGGTCAGGCGCTGAACATGACACAGCCGGCTGTCAGCC 100
|||||||||||||||.|||||||||||.|||||.|||||.||.|||||||
RBAM_031350__ 51 CTTTACAAAAGCGGGGCAGGCGCTGAATATGACGCAGCCCGCCGTCAGCC 100
BSNT_05140___ 101 ATGCGATTTCTGCGATCGAAGCTGAGCTTGATGTAAAGCTGATCATTCGT 150
||||.|||||||||.|.||..|.|||||.|...|.|||||||||||.||.
RBAM_031350__ 101 ATGCCATTTCTGCGCTTGAGTCAGAGCTCGGCATCAAGCTGATCATCCGC 150
BSNT_05140___ 151 GACCGCCGCAATGGCCTGATGCTGACAGATACG---GGAAAACAGATCTT 197
||.||||||||.|||.|.|.|||.||.||.||| |||||| ||..|
RBAM_031350__ 151 GAGCGCCGCAACGGCGTAAGGCTCACGGACACGGGCGGAAAA---ATTCT 197
BSNT_05140___ 198 AGTACACATTAGAGAAGTCTTAAAAGGCATTGAAAAAGTTGAGCAGGTAG 247
.||.||.||.|||||.||..|.||||||||.|||||||..||||||.|.|
RBAM_031350__ 198 CGTCCATATCAGAGAGGTGCTCAAAGGCATAGAAAAAGCCGAGCAGCTGG 247
BSNT_05140___ 248 CAGCAGCGGAAAAAGGGCTTGAACTGGGAACGATCCATATCGGCACATTC 297
|.||.|||||||.|||||||||||.|||||||||.||.|||||||||||.
RBAM_031350__ 248 CGGCCGCGGAAAGAGGGCTTGAACAGGGAACGATTCACATCGGCACATTT 297
BSNT_05140___ 298 TCAACTGCCTCGGCTTATTTTATGCCGAAGCTGATCAGTGAATTTAAACA 347
.|..|.||.||.||||||||.||.||.|||||||||||.|..||||||.|
RBAM_031350__ 298 CCGGCCGCTTCCGCTTATTTCATTCCAAAGCTGATCAGCGTGTTTAAAAA 347
BSNT_05140___ 348 AAAATATCCGAAACTTGAGCTTGTGCTGCACGAGGGAACTGTAAATGAAG 397
|...||||||||.||||||||.|||||.||.||.|||||.||.||.||||
RBAM_031350__ 348 ACGGTATCCGAAGCTTGAGCTGGTGCTTCATGAAGGAACGGTTAACGAAG 397
BSNT_05140___ 398 TCAAGGAGTGGCTTCATACGCGGATGATAGATGTTGGGATTCTTCTGTAT 447
|.|||||.|||||.|...|.|||.|.||||||||.||.||...|||.|.|
RBAM_031350__ 398 TAAAGGAATGGCTCCGCTCCCGGGTAATAGATGTGGGTATCACTCTTTTT 447
BSNT_05140___ 448 CCAACAGAGGAGATGGAGTACATTCATTTGAAAAAAGACAAAATGGCTGT 497
||.||.||.||.|||||.||..|.|...||||||||||.||||||||.||
RBAM_031350__ 448 CCTACGGAAGACATGGAATATCTGCCGCTGAAAAAAGATAAAATGGCCGT 497
BSNT_05140___ 498 CGTGCTCAGGGACGATCACCCGCTTGCCG-------GTCATTCGGCCATT 540
||||||.||..|.|||||.||||||..|| |||| ||.
RBAM_031350__ 498 CGTGCTTAGAAATGATCATCCGCTTTGCGGCTGTGAGTCA-------ATC 540
BSNT_05140___ 541 ACGCTGAAAGATCTTGACCATGAACCGATGATCGTCTGTGACGGAGGCTA 590
||.||||||||||||||||...|.|||||||||.|||||||||||||.||
RBAM_031350__ 541 ACTCTGAAAGATCTTGACCGCCAGCCGATGATCATCTGTGACGGAGGATA 590
BSNT_05140___ 591 TGAATCACCATTTGTCGATATGTTCAGGCAGGCGGGCGCTACGCTGCAC- 639
.||||||||.|||.|.||||||||.|.|.||||.||..||..|||| ||
RBAM_031350__ 591 CGAATCACCGTTTATTGATATGTTTAAGGAGGCAGGATCTGTGCTG-ACT 639
BSNT_05140___ 640 -CCAGCTTTCACGGTCTATAACATCAACACCTCGATCAGTATGATCAGAG 688
|| ||.|||||.||.||.|||.||||.||.||.|||||.|||||||.||
RBAM_031350__ 640 GCC-GCATTCACTGTTTACAACGTCAATACGTCCATCAGCATGATCAAAG 688
BSNT_05140___ 689 AAGGCCTGGGTCTCGCGATTTTATCAGAAATGTCCATGTCGGGGATGCCG 738
|.||.|||||..|.|||||.||||||.|||||||.||||||||.||..||
RBAM_031350__ 689 AGGGGCTGGGAATTGCGATATTATCACAAATGTCTATGTCGGGTATATCG 738
BSNT_05140___ 739 CTGCCGGAGCATGTGGTGACCCGGGAATTGGACCCGCAGGTATACCGTGA 788
||||||||..||||.|||||..|||||.|..|.|.|..|||.||||||||
RBAM_031350__ 739 CTGCCGGAAAATGTCGTGACAAGGGAACTCAATCAGGCGGTGTACCGTGA 788
BSNT_05140___ 789 TGTGCAGCTTGCTGTTCCGTCGCTAAAGGAGGCTTCTCTGGCGGCTAAGC 838
|||.|.||||||.|||||.||..|||||||||||||..|||||||.||.|
RBAM_031350__ 789 TGTTCTGCTTGCCGTTCCTTCTATAAAGGAGGCTTCATTGGCGGCAAAAC 838
BSNT_05140___ 839 TCTTTATTGAGATGGCTAAGGAGCTGTTTGGAGCA--------GAATAA 879
|.||||||.|.||.||..||||.|| || ||||||
RBAM_031350__ 839 TTTTTATTCAAATCGCACAGGAACT--------CACAAAGAACGAATAA 879
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.