Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04943 and RBAM_030320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_04943___yvrD.1.9828.seq
# -bsequence dna-align/RBAM_030320___yvrD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: RBAM_030320___yvrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity: 594/812 (73.2%)
# Similarity: 594/812 (73.2%)
# Gaps: 40/812 ( 4.9%)
# Score: 2095.5
#
#
#=======================================
BSNT_04943___ 1 ATGGATTTACAGC-TAAAAGACAAACTCGTCTTAATCACCGGCTCGACGT 49
|||||.||||||| |.||.|| ||.|||||.||.||.||.||.||.||.|
RBAM_030320__ 1 ATGGAATTACAGCTTGAACGA-AAGCTCGTGTTGATTACAGGATCAACCT 49
BSNT_04943___ 50 CCGGTATCGGGAAAGCCGCCGCAAAAAGCTTTCT-GCAAGAGGGTGCGGC 98
|.||.|||||.|||||.||.||||||||||||.| || .||.||.||.|.
RBAM_030320__ 50 CAGGCATCGGAAAAGCTGCGGCAAAAAGCTTTTTAGC-CGAAGGCGCCGA 98
BSNT_04943___ 99 AGTCATTGTCAACGGACGCAAACAGGAGACTGTTAATCGCACGATTGAAG 148
.||.|||.|.||||||.|.|||.|.||.|||||..|.||.|||.||||||
RBAM_030320__ 99 GGTGATTATAAACGGAAGAAAAAAAGAAACTGTGGAACGGACGGTTGAAG 148
BSNT_04943___ 149 AGCTTTCTGGATATGGAACGGTGCACGGTGCTGCTGCCGATTT-----GT 193
|||||||.|..||.||||||||.|||||....|||||.||||| ||
RBAM_030320__ 149 AGCTTTCCGCTTACGGAACGGTTCACGGCATCGCTGCGGATTTATCGCGT 198
BSNT_04943___ 194 CAAAAACAGATGAAGCAGCGGCTTTTA-TTGAAAAAGTAAA--------- 233
|| .|||||.||.| .|.| |||| ||||
RBAM_030320__ 199 CA-----GGATGAGGCGG-----ATGACTTGA-----TAAAGCGCGCCGG 233
BSNT_04943___ 234 TGAAATCGGTGATATTGATATCCTTGTCAACAACCTTGGTTTCTTCGAGG 283
.|.||||||.||..|.|||||.||.|||||.||.||.|||||.||.||.|
RBAM_030320__ 234 CGGAATCGGGGAAGTCGATATTCTCGTCAATAATCTCGGTTTTTTTGAAG 283
BSNT_04943___ 284 TAAAAGACTTTGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAA 333
||||||||||.||.||.|||.|.|||||.||.||||.||..|||||.|||
RBAM_030320__ 284 TAAAAGACTTCGCTGAGGTGTCTGATGACGAATGGACTCGGTATTTTGAA 333
BSNT_04943___ 334 GTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAAT 383
|||||.||.|||||||||||.||.....||||.|..||.||.||..||||
RBAM_030320__ 334 GTGAATGTTATGAGCGCCGTGCGCCTGTGCCGGCGTTTTCTGCCGCAAAT 383
BSNT_04943___ 384 GCTTGCCAAAAACAGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCG 433
|||.|..|.|||||||||.||.|||.|.||.||..|.||||||||.||.|
RBAM_030320__ 384 GCTCGAGAGAAACAGCGGACGGATTCTGAACATCTCCAGTGAAGCCGGTG 433
BSNT_04943___ 434 TCAAACCGC-TGC-CAACGATGATTCCATACTCAATGACAAAAACGGCGC 481
||||||||| ||| ||| ||||||||.||.||||||||.|||||||||.
RBAM_030320__ 434 TCAAACCGCTTGCGCAA--ATGATTCCGTATTCAATGACGAAAACGGCGT 481
BSNT_04943___ 482 TGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAATGTG 531
|.||||||.|.||..|.||||||||.||||||||.||||||||||||||.
RBAM_030320__ 482 TAATCAGCTTGTCCCGGGGAATGGCGGAAATGACGAAAGGCACAAATGTC 531
BSNT_04943___ 532 ACGGTTAACTCAGTGCTCCCGGGACCTACTTGGACAGAGGGCGTGGCATC 581
|||||.|||||.|||||.||||||||.||.|||||.||.|||||.||.||
RBAM_030320__ 532 ACGGTCAACTCCGTGCTGCCGGGACCGACATGGACCGAAGGCGTCGCTTC 581
BSNT_04943___ 582 CTATATGGAAGGCGCCGCAAAAGCAGCCGGCCAGGATACAGATACATTTA 631
.||.||||||||.||||||||.||.|||||..|.||.|||||.|..||..
RBAM_030320__ 582 TTACATGGAAGGAGCCGCAAAGGCTGCCGGAGAAGACACAGACAGCTTCG 631
BSNT_04943___ 632 TCAAAGACTATTTCAAGGTCAATGAGCCAACCTCACTTATTCAGCGATAC 681
||...||.|||||.||.||.|||||.||.||.|||.|.||||||||.||.
RBAM_030320__ 632 TCCGGGATTATTTTAAAGTGAATGAACCGACATCATTGATTCAGCGCTAT 681
BSNT_04943___ 682 GCGACAGCAGAAGAAGTCGCCAACACAATCGTATTCCTCGCGTC-TGACG 730
||.||..|.||||||||||||||.||.||.|||||.|||||.|| |.| |
RBAM_030320__ 682 GCAACCCCGGAAGAAGTCGCCAATACGATTGTATTTCTCGCTTCATCA-G 730
BSNT_04943___ 731 CCGCATCCGCCATTAACGGCACGGCACAGCGTGTGGAAGGCGGCATTATC 780
|.||.||.||||||||.|||||.||||||||.||.|||||||||||.|||
RBAM_030320__ 731 CGGCTTCTGCCATTAATGGCACCGCACAGCGGGTTGAAGGCGGCATCATC 780
BSNT_04943___ 781 CGTTCTCTGTAG 792
||.||..|.||.
RBAM_030320__ 781 CGCTCCATTTAA 792
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