Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04887 and RBAM_030060

See Amino acid alignment / Visit BSNT_04887 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence dna-align/BSNT_04887___yusV.1.9828.seq
#    -bsequence dna-align/RBAM_030060___yusV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04887___yusV-RBAM_030060___yusV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04887___yusV-RBAM_030060___yusV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04887___yusV
# 2: RBAM_030060___yusV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity:     675/891 (75.8%)
# Similarity:   675/891 (75.8%)
# Gaps:          69/891 ( 7.7%)
# Score: 2766.5
# 
#
#=======================================

BSNT_04887___      1 ATGTATATAGAAAACGTGCAATACATAGTGCTGCTAAAAAGCCAGCAAAA     50
                                                                       
RBAM_030060__      0 --------------------------------------------------      0

BSNT_04887___     51 AGGAGCGGTTATGGGTATGAGTGCAATTTCTACAGAAACGCTGAGCTTAG    100
                                     ||||||||||||||||||||.|||||||||||||
RBAM_030060__      1 ----------------ATGAGTGCAATTTCTACAGAGACGCTGAGCTTAG     34

BSNT_04887___    101 GATACGGGGATGCCGTTATTATTGATGAGTTGAATTTAACAATTCCCAAA    150
                     |.|||||.||..|.|||||.|||||.||.|||.||.|..|.|||||.|||
RBAM_030060__     35 GGTACGGAGAAACTGTTATCATTGACGAATTGGATGTCGCGATTCCAAAA     84

BSNT_04887___    151 GGTGAAATTACCGTATTTATTGGCAGCAATGGCTGCGGAAAATCGACACT    200
                     ||.|||||.||.|||||.||.||.|||||.|||||||||||||||||.||
RBAM_030060__     85 GGCGAAATCACTGTATTGATCGGAAGCAACGGCTGCGGAAAATCGACGCT    134

BSNT_04887___    201 TTTACGTTCATTAGCGCGCCTGATGAAGCCGAGAGGCGGTTCAGTGCTGC    250
                     ||||||||||||.||.||.||||||||.|||||.||||||||.|||||..
RBAM_030060__    135 TTTACGTTCATTGGCCCGGCTGATGAAACCGAGGGGCGGTTCTGTGCTTT    184

BSNT_04887___    251 TGGAAGGAAGAGCGATTGCCAAGCTTCCGACGAAGGAAGTCGCAAAAGAG    300
                     |.|||||||.|||.||.||.||||||||||||||||||||.||||.||||
RBAM_030060__    185 TAGAAGGAAAAGCCATCGCTAAGCTTCCGACGAAGGAAGTGGCAAGAGAG    234

BSNT_04887___    301 CTCGCAATCCTGCCCCAAGGTCCTTCGGCTCCTGAGGGGCTGACGGTGCA    350
                     |||||.||..||||.||..||||.||.|||||.||.||.|||||||||||
RBAM_030060__    235 CTCGCTATTTTGCCGCAGAGTCCGTCAGCTCCCGAAGGCCTGACGGTGCA    284

BSNT_04887___    351 TCAGCTGGTGAAGCAAGGAAGATATCCTTACCAAAACTGGCTGAAGCAGT    400
                     ||||||.||||||||.||||||||.|||||.||||.||||||||||||.|
RBAM_030060__    285 TCAGCTTGTGAAGCAGGGAAGATACCCTTATCAAAGCTGGCTGAAGCAAT    334

BSNT_04887___    401 GGTCAAAAGAGGATGAGGAAGCAGTTGAAAGAGCGCTTAAAGCAACAAAG    450
                     ||||.||||||||.||.||.|||||.|.||.||||||||||||.||.|||
RBAM_030060__    335 GGTCCAAAGAGGACGAAGACGCAGTGGCAAAAGCGCTTAAAGCGACGAAG    384

BSNT_04887___    451 CTTGAGGACATGGCTGACCGCGCCGTTGATTCTTTGTCAGGCGGACAGCG    500
                     ||||||||.|||||.|||||..|.||.|||||.|||||||||||||||||
RBAM_030060__    385 CTTGAGGAAATGGCCGACCGTCCGGTGGATTCCTTGTCAGGCGGACAGCG    434

BSNT_04887___    501 CCAGCGGGCTTGGATTGCGATGACGCTTGCCCAGGAAACGGATATCATCC    550
                     ||||||.||.||||||||||||||.||.||.|||||.|||||||||||.|
RBAM_030060__    435 CCAGCGCGCATGGATTGCGATGACACTCGCTCAGGATACGGATATCATTC    484

BSNT_04887___    551 TTCTTGACGAGCCGACGACGTATTTAGACATGACGCATCAAATTGAAATT    600
                     |.||||||||||||||.||.|||.|.||||||||||||||||||||||||
RBAM_030060__    485 TGCTTGACGAGCCGACAACCTATCTCGACATGACGCATCAAATTGAAATT    534

BSNT_04887___    601 CTTGATTTGCTGTTTGAGCTGAATGAAAAGGAAGGCCGGACGATTGTTAT    650
                     |||||||||||||||||..|.||||||||.|||...||.||.||.||.||
RBAM_030060__    535 CTTGATTTGCTGTTTGAATTAAATGAAAAAGAAAAACGCACAATCGTCAT    584

BSNT_04887___    651 GGTACTCCATGACTTAAACTTGGCGTGCCGCTATGCACACCATCTCGTGG    700
                     |||.||.||.|||.|.||..||||.|||||.|||||.||..||||.||.|
RBAM_030060__    585 GGTGCTGCACGACCTGAATCTGGCATGCCGTTATGCCCATTATCTGGTCG    634

BSNT_04887___    701 CCATAAAAGACAAACGGATTTATGCAGAAGGCCGTCCGGAAGAGGTCATC    750
                     ||||.||.||.||||.||||||.|||||.||||||||.|||||.||||||
RBAM_030060__    635 CCATTAAGGATAAACAGATTTACGCAGAGGGCCGTCCCGAAGAAGTCATC    684

BSNT_04887___    751 ACTTGTGATCTTGTGCAAAATGTGTTTTCTATGAACTGTCAGGTTACACA    800
                     |||||.||.|||||.||..|.||.|||.|.||||||||.|||||.||.||
RBAM_030060__    685 ACTTGCGAGCTTGTACAGCAGGTCTTTGCGATGAACTGCCAGGTAACGCA    734

BSNT_04887___    801 GGACCCGCTCTTCGGAACGCCTCTTTGCATTCCTCATGGCAGGGGCAGAT    850
                     .||.|||||.|||||.|||||.|||||||||||.||.||..|.|||||||
RBAM_030060__    735 AGATCCGCTGTTCGGCACGCCGCTTTGCATTCCGCACGGACGCGGCAGAT    784

BSNT_04887___    851 GCATTGTCCAGGAAGCGGCTTTCACATCAC-ATGG--ATAA    888
                     |.||.||.|||||||||||..||||..|.| ||.|  ||||
RBAM_030060__    785 GTATCGTGCAGGAAGCGGCCCTCACCGCCCGATTGTCATAA    825


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