Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04859 and RBAM_029850

See Amino acid alignment / Visit BSNT_04859 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04859___yusE.1.9828.seq
#    -bsequence dna-align/RBAM_029850___yusE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04859___yusE-RBAM_029850___yusE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04859___yusE-RBAM_029850___yusE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04859___yusE
# 2: RBAM_029850___yusE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     258/328 (78.7%)
# Similarity:   258/328 (78.7%)
# Gaps:          14/328 ( 4.3%)
# Score: 1002.0
# 
#
#=======================================

BSNT_04859___      1 ATGAAAGAACTCCAAGAACACGAACTCG-ATCACATTGAAGATGATGTGT     49
                     ||||||||||||||||||.|.||||||| ||| .|||.|.|||||.||.|
RBAM_029850__      1 ATGAAAGAACTCCAAGAAAATGAACTCGAATC-GATTCAGGATGACGTTT     49

BSNT_04859___     50 ACCTTCTATATTTATATACTCCGTTTTGCGGCACCTGCCAGCTTGCAAGC     99
                     |.||.||.|||||.||.||.||||||||||||||.||||||||.||...|
RBAM_029850__     50 ATCTCCTGTATTTGTACACCCCGTTTTGCGGCACATGCCAGCTGGCGTCC     99

BSNT_04859___    100 AAAATGCTGACAGTGGTGAAAGAAATGCTGCCGGATGTCGCCTTCTATCA    149
                     ||||||||.||.||.||..|||||||||||||.|..|.||||||||||.|
RBAM_029850__    100 AAAATGCTTACTGTCGTCGAAGAAATGCTGCCCGGCGCCGCCTTCTATAA    149

BSNT_04859___    150 AAACAATGTCAATTACTCTCCGACATTCGCAAAAGCGTATCAAATTGAAA    199
                     ||||||.||.|||||.||.||..|||||||.|||||.|||||.|||||||
RBAM_029850__    150 AAACAACGTGAATTATTCCCCCGCATTCGCCAAAGCCTATCAGATTGAAA    199

BSNT_04859___    200 GCGTCCCTTGTTTTCTGCTGTTTAAAGGCGGAAAGGTGGTCGAAAGAGGA    249
                     ||||.||.||.|||.|||||||||||||||||.||.|.||.||.|.||||
RBAM_029850__    200 GCGTTCCGTGCTTTTTGCTGTTTAAAGGCGGAGAGCTTGTTGAGAAAGGA    249

BSNT_04859___    250 TATGCATTTCATTCCGTTTCTTATTTATATGAGCTGATCAAACAAAAATC    299
                     ||.||.||.|..||||||||.|||||||||||||||||.|||||||||.|
RBAM_029850__    250 TACGCCTTCCGCTCCGTTTCCTATTTATATGAGCTGATTAAACAAAAAAC    299

BSNT_04859___    300 ATCTTCCGCA-----TCCC-ATTTATGA    321
                     ||    ||||     |||| |  |.|||
RBAM_029850__    300 AT----CGCAAACGTTCCCGA--TGTGA    321


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.