Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04698 and RBAM_028990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_04698.1.9828.seq
# -bsequence dna-align/RBAM_028990___yukJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04698-RBAM_028990___yukJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04698-RBAM_028990___yukJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04698
# 2: RBAM_028990___yukJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 504/685 (73.6%)
# Similarity: 504/685 (73.6%)
# Gaps: 14/685 ( 2.0%)
# Score: 1790.0
#
#
#=======================================
BSNT_04698 1 ATGGCTGTTCAGCAATATGGCGTGTTAAAAGGCATAGTCTTAGACATGAA 50
||||||||||||||.|||||.||.||||||||||..||.|.|||.||||.
RBAM_028990__ 1 ATGGCTGTTCAGCACTATGGTGTATTAAAAGGCACTGTGTCAGATATGAG 50
BSNT_04698 51 GCGGGAAACAGATGATGACAGTCCTCATTTCCAAGTCAAAATGCTCGGTG 100
..||||||||||||||||...|||.|||||.||||||.|..||||.||.|
RBAM_028990__ 51 AAGGGAAACAGATGATGATTCTCCGCATTTTCAAGTCGAGGTGCTAGGCG 100
BSNT_04698 101 AAGAGAATACGTATTACAGGTGCGCCATCAATGTGATGTCCAGTTCTGAG 150
|.....|||||...||..|.||.||.||||||||.|||||.|||||..|.
RBAM_028990__ 101 AGCCTGATACGCGCTATCGCTGTGCGATCAATGTCATGTCAAGTTCAAAA 150
BSNT_04698 151 GAATCTGAAGTATTGTATTTGGCTGACGATCAGTTTGATTCGGGCTCAAT 200
|||||.||.||..|||||..|||...||||||.|||||..|..||.|.||
RBAM_028990__ 151 GAATCAGAGGTTCTGTATGCGGCACGCGATCATTTTGACGCAAGCGCGAT 200
BSNT_04698 201 TACCATCCTTCCGAACATGCCGTATGGATATACAAGGATCAATGAAGCAA 250
.|||.|.||.||.|||||.||||||||||||||....||..|||||.|.|
RBAM_028990__ 201 CACCCTGCTGCCCAACATTCCGTATGGATATACCCCAATTGATGAAACCA 250
BSNT_04698 251 ACCGTGAAGTGGCACTGGATTATGTGCGGGGCAATTTGTTTGACCCGCGG 300
.||||||..||||.|||||||||||.||.|.|...||||||||.||.|||
RBAM_028990__ 251 GCCGTGAGCTGGCGCTGGATTATGTCCGCGACGGATTGTTTGATCCCCGG 300
BSNT_04698 301 GAAATGAAGCCTTTGCCTCATGAAATCACAGGACCTGATAATGATTTAAA 350
.|.|||..|||..|.||.||||||.||||.||.||.||||||||.|||||
RBAM_028990__ 301 AACATGGTGCCCCTCCCGCATGAAGTCACCGGTCCGGATAATGACTTAAA 350
BSNT_04698 351 TGATTTTATTGAAACCTATATGAAGAAAGCACAAGAT--GAGAAAGCGCC 398
|||.||||||||.||.||.|||.|.||||| ||| || ||.|||||..|
RBAM_028990__ 351 TGACTTTATTGAGACGTACATGCAAAAAGC-CAA-ATCAGAAAAAGCCAC 398
BSNT_04698 399 GGTTTATATATTCGGTTCAAAATTCGGCCCTGAACAGGCTGCAGATAAAA 448
.||.|||||.|.|||.||.||||||||.||.||.|.||..||.|||||.|
RBAM_028990__ 399 CGTCTATATTTACGGCTCTAAATTCGGGCCGGAGCCGGGCGCTGATAAGA 448
BSNT_04698 449 TATTCGGCTTTACCCCGACTAACGGAATGCACAATATCCATATGAATCAA 498
|.|||||.||.|..|||||.|||||.|||||.|||||.|||||||||||.
RBAM_028990__ 449 TTTTCGGGTTCAAGCCGACAAACGGCATGCATAATATTCATATGAATCAG 498
BSNT_04698 499 GGGAATGCAATGGATACGCGCTGGAAAAAAGACAACGGCTCTTGGCATGA 548
||.||..||||.|||||.||||||||.||.||.|||||..|.|||||.||
RBAM_028990__ 499 GGAAACCCAATTGATACACGCTGGAAGAAGGATAACGGAACGTGGCACGA 548
BSNT_04698 549 CGGGGGTATTCTGATTCAGTTTGCAGATCAGTGGGCCGCTGTGTTTTTAG 598
|||.||||||.|.||.|||||||||||.|||||||||||.||.|||||.|
RBAM_028990__ 549 CGGAGGTATTTTAATCCAGTTTGCAGACCAGTGGGCCGCGGTCTTTTTGG 598
BSNT_04698 599 CGTTTTTATCCCAATCTTGGTGTAACG-ATGAAAACGGAAACCCTGTCAG 647
|.|||.|.||.||.||.||||| .||| |||||.|.||..|||||...|.
RBAM_028990__ 599 CTTTTCTGTCTCAGTCATGGTG-CACGAATGAAGAAGGCCACCCTTATAC 647
BSNT_04698 648 AGATTGTGATCATACCCA----AACGTCTGCGTAA 678
|..||||||||||||.|| ||||.|||.
RBAM_028990__ 648 ATTTTGTGATCATACACAGCTTAACGGCTGA---- 678
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