Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04599 and RBAM_028320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:03
# Commandline: needle
# -asequence dna-align/BSNT_04599___mcpB.1.9828.seq
# -bsequence dna-align/RBAM_028320___mcpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04599___mcpB-RBAM_028320___mcpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04599___mcpB-RBAM_028320___mcpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04599___mcpB
# 2: RBAM_028320___mcpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity: 1476/2038 (72.4%)
# Similarity: 1476/2038 (72.4%)
# Gaps: 101/2038 ( 5.0%)
# Score: 5048.5
#
#
#=======================================
BSNT_04599___ 1 ATGAAGACTTTTATCAATTGGCTTAAGAAA-CCGTCTATTTCAAAGAAAT 49
|||||.|..||.||||||||| |..|.||| .|.||.||||||...||||
RBAM_028320__ 1 ATGAAAAAATTCATCAATTGG-TGCACAAAGGCATCGATTTCACGTAAAT 49
BSNT_04599___ 50 TAATCGTCTCATTTATTGCGATTCTCATTATCCCTATTCTTATATTAGAA 99
|||||.|.||||||||.|.|||..|.||.||.||.|||||..|.||||||
RBAM_028320__ 50 TAATCATTTCATTTATCGTGATCTTAATCATACCGATTCTCGTGTTAGAA 99
BSNT_04599___ 100 TTTAGCTCTTACCGAAGCGCCAGCGGAAA---GCTGGATCAGGAAATTAT 146
||.||.||.||||..|..||.||| || |||||||.|..|.|||..
RBAM_028320__ 100 TTCAGTTCATACCATACGGCGAGC---AATTCGCTGGATGATCAGATTTC 146
BSNT_04599___ 147 GGGAAATGCGAAAAACAGTGTCGATACATTTAATACAACTGTTACAAATG 196
.||.||.||||||||.|...||||..|.|||||.|||||..|||||||||
RBAM_028320__ 147 AGGCAACGCGAAAAATAACATCGAATCTTTTAACACAACCATTACAAATG 196
BSNT_04599___ 197 ATCTGGGAGAAAAAGCGAAAGC-AGTCACCTTTTTCAGTGAATCTCTTAA 245
||.|.||.|.||||||.||.|| |.|.| .||||||||||||.| .||||
RBAM_028320__ 197 ATATCGGCGCAAAAGCAAAGGCGATTGA-ATTTTTCAGTGAAAC-GTTAA 244
BSNT_04599___ 246 AA-GGTCCGCAT--TCAAAGGGAA----ATCCAATCAAGAAGAGATCAAA 288
|| ||||..|.| ||||||..|| |||...||.|||||| |||
RBAM_028320__ 245 AAGGGTCATCCTTCTCAAAGAAAAACATATCTGCTCTAGAAGA----AAA 290
BSNT_04599___ 289 GCTAAATTTTC--ACAATATGTATCTATTAATCAAGGA-GTAGCCAGAAT 335
| ||| .|||||....||||||.|| ||||| ||||||.|.||
RBAM_028320__ 291 G-------TTCGGGCAATACACGTCTATTCAT-AAGGACGTAGCCCGCAT 332
BSNT_04599___ 336 TTATGGGGGCGCAGATAACGGCACTTACGTACAAGCGCCAAA--AGAAAA 383
|||.||.||..|.||..|||||...||||.|||.|||||.|| ||||.|
RBAM_028320__ 333 TTACGGAGGAACGGAAGACGGCGGCTACGCACAGGCGCCGAAGGAGAATA 382
BSNT_04599___ 384 ATTGCCGGACGGATACGACCCGAGACAACGCCCTTGGTACCAGGATGCGA 433
.| ||||.||..|||||.||||||..||||.|||||||..|.||.||..
RBAM_028320__ 383 CT--CCGGCCGATTACGATCCGAGAACACGCACTTGGTATAAAGACGCTG 430
BSNT_04599___ 434 TGAAGGCCGGCGGTGAAATTGTCGTGACAGATCCTTACGTGGCTGCGAGT 483
|||||||||||||.....|.||.||.||.||.||||||...||.||.||.
RBAM_028320__ 431 TGAAGGCCGGCGGCACGCTCGTTGTCACCGACCCTTACACCGCGGCAAGC 480
BSNT_04599___ 484 GACGGAAGCATGGTCATTACCATTGCACAGGAGCTGAAGGACGGATCTGG 533
|||||.|||||||||.|.|||.|.|||.||.||.||.||||||||.|.||
RBAM_028320__ 481 GACGGCAGCATGGTCGTCACCGTGGCAAAGCAGATGCAGGACGGAACAGG 530
BSNT_04599___ 534 CGTTGTCGCCATGGATATTACCATTGATAAATTGTTAGAA-CAAATGAAA 582
|||.||.||||||||||||||.|||||..|..||.| ||| ||.|||.|.
RBAM_028320__ 531 CGTAGTGGCCATGGATATTACGATTGACCAGCTGCT-GAAGCAGATGCAG 579
BSNT_04599___ 583 CAAATCAAGGTCGGAAAAGAAGGTTATGCTTTCATTGCAACAAAAAACAA 632
..||||||..||||..||.||||.|..|..||.||..|..|.|||||.||
RBAM_028320__ 580 GGAATCAAAATCGGGCAAAAAGGATTCGTGTTTATCACGTCTAAAAATAA 629
BSNT_04599___ 633 AACCTATGTCGCCCACAAGAACCATAAGGCTGGAGA-AAAGCTTTCA--- 678
||||||||||||.||.||..||||.||..|.||.|| |||| |||||
RBAM_028320__ 630 AACCTATGTCGCGCATAAAGACCACAAACCGGGCGATAAAG-TTTCAACC 678
BSNT_04599___ 679 ----GGC-GACTG-GGTAGCCAAAATGTATGCGAATGACAGCGGTGAACT 722
||| ||.|| ||||..|| || ||.||||||||
RBAM_028320__ 679 CCGTGGCTGAATGAGGTATACA--------GC-AAAGACAGCGG------ 713
BSNT_04599___ 723 CCAGTATACTCTTAATA-ACG----------AAGATAAAAAGATGACCTA 761
||.||| ||.||| ||| ||.|||||||.|||.|.|.
RBAM_028320__ 714 -CATTAT----TTCATACACGCTCGATGATCAAAATAAAAAAATGGCGTT 758
BSNT_04599___ 762 TACTACAAACGAACTGACTGGTTGGAAAATAGCCGGCACAATGTATATGG 811
|||.|||||..|||||||.||.||||||||||..||.|..|||.|..|..
RBAM_028320__ 759 TACGACAAATAAACTGACCGGATGGAAAATAGAGGGGAGCATGGAGCTCA 808
BSNT_04599___ 812 ATGAAATTAAGGATGCCTCAAAGTCTGTGCTGACTACAGGAATGATTGTG 861
|.||||||||.||.||||||.|..|.||||||||.|..||||||||.||.
RBAM_028320__ 809 ACGAAATTAAAGACGCCTCACAACCGGTGCTGACGATGGGAATGATCGTC 858
BSNT_04599___ 862 CTGATTGCTTCCATTGTGGCA--GGCGGAATTTTAATTCTGTTTATCGTT 909
||....||.||||||.| || ||.|||||||||||||||||.||.||.
RBAM_028320__ 859 CTTGCAGCATCCATTAT--CATCGGGGGAATTTTAATTCTGTTGATTGTC 906
BSNT_04599___ 910 CGTTCAATTACAAAACCGTTAAAACGTCTTGTTCAATCATCGAAAACGAT 959
.|.||.|||||...||||.|.|||||.|||||.|..||.||.|||...||
RBAM_028320__ 907 AGATCCATTACGTCACCGCTGAAACGGCTTGTCCGCTCTTCTAAACAAAT 956
BSNT_04599___ 960 CAGCAGGGGGGATCTGACCGAAACGATCGAAATCCATTCAAAGGATGAGC 1009
||||.|.||.||..||||.|||||.||.||.||||..||.||.||||| .
RBAM_028320__ 957 CAGCGGCGGAGACTTGACTGAAACCATTGATATCCGCTCGAAAGATGA-A 1005
BSNT_04599___ 1010 TTGGG-GAGCTTGGGGAAAGCTTCAATGAAATGGGACAATCTCTCCGCTC 1058
||||| ||.||.||.|..|||||.||||||||||||.|||||||.|||..
RBAM_028320__ 1006 TTGGGCGAACTCGGCGCGAGCTTTAATGAAATGGGAGAATCTCTGCGCGG 1055
BSNT_04599___ 1059 GCTGATCAGCGCTATTCAGGACTCGGTGAACAATGTGGCCGCATCTTCCG 1108
.|||||||||||.||.||..||||.||..||||.||||||||.||.||.|
RBAM_028320__ 1056 ACTGATCAGCGCGATCCAAAACTCTGTCGACAACGTGGCCGCGTCATCGG 1105
BSNT_04599___ 1109 AACAGCTTACCGCATCTGCCGGGCAGACGAGTAAAGCCACCGAGCATATT 1158
||.||||.|||||.||.||...||||||.||.|||||.||.||.||||||
RBAM_028320__ 1106 AAGAGCTGACCGCTTCAGCTTCGCAGACAAGCAAAGCGACGGAACATATT 1155
BSNT_04599___ 1159 ACGATGGCGATTGAGCAGTTCTCAAACGGAAACGAGGAGCAAAGCGAAAA 1208
||.|||||.|||||||||||.||||||||||||||.||||||||||||||
RBAM_028320__ 1156 ACAATGGCCATTGAGCAGTTTTCAAACGGAAACGAAGAGCAAAGCGAAAA 1205
BSNT_04599___ 1209 GGTTGAATCCAGCTC--TCATCAGCTGAACTTA-ATGAATGAAGGACTC- 1254
.||.||.||.||||| ||| ||||||| |.| ||.|||||.||||||
RBAM_028320__ 1206 AGTCGATTCAAGCTCAGTCA--AGCTGAA-TCATATAAATGACGGACTCG 1252
BSNT_04599___ 1255 CAGCAAGTCTCACAAACATCGTCAGATATTACAAAGGCATCTATCCAATC 1304
|.|| .||.||.|..|||||.|||...|||||..|.|||||||..|||||
RBAM_028320__ 1253 CCGC-CGTTTCCCGCACATCATCATCCATTACGGAAGCATCTAAACAATC 1301
BSNT_04599___ 1305 AACGGAAATCGCCGG-AACGGGTGAGAAGTTTGTGCAGCAGACAGTCGGA 1353
.|.||||...||||| |.||||..|||| |.|||||||||.||.|||||.
RBAM_028320__ 1302 GAAGGAAGCTGCCGGCACCGGGGAAGAA-TATGTGCAGCAAACCGTCGGG 1350
BSNT_04599___ 1354 CAAATGAA-CTCGATTAATCAATCTGTTCAGCAGGCTGAAGCTGTTGTCA 1402
||.||||| ||| ||.||||||||.||.||||||||.|||||.|||||.|
RBAM_028320__ 1351 CAGATGAATCTC-ATCAATCAATCGGTCCAGCAGGCGGAAGCGGTTGTAA 1399
BSNT_04599___ 1403 AAGGCTTAGAAGGAAAATCAAAAGACATCACAAGCATTTTGAGAGTCATC 1452
|||||.|.||.|..|||||||||||||||||....|||||.|||||||||
RBAM_028320__ 1400 AAGGCCTTGAGGCCAAATCAAAAGACATCACTCATATTTTAAGAGTCATC 1449
BSNT_04599___ 1453 AACGGAATCGCTGACCAAACAAATCTGCTTGCACTAAATGCAGCCATTGA 1502
|||||.||.||.||.||.|||||.||||||||..||||||||||||||||
RBAM_028320__ 1450 AACGGTATTGCCGATCAGACAAACCTGCTTGCGTTAAATGCAGCCATTGA 1499
BSNT_04599___ 1503 AGCGGCGCGTGCCGGAGAGTCAGGACGCGGCTTCTCTGTCGTAGCGGAGG 1552
||||||..|.|||||.||.|..||.||.||||||||.||.|||||.||.|
RBAM_028320__ 1500 AGCGGCAAGAGCCGGTGAATACGGCCGGGGCTTCTCAGTGGTAGCCGAAG 1549
BSNT_04599___ 1553 AGGTGCGCAAGCTGGCTGTCCAATCAGCCGATTCAGCGAAAGAAATCGAA 1602
|.||||||||||||||.||||||||.||||.|||.||.|||||.||.|||
RBAM_028320__ 1550 AAGTGCGCAAGCTGGCCGTCCAATCCGCCGGTTCTGCCAAAGAGATTGAA 1599
BSNT_04599___ 1603 AAGCTGATCCAAGAAATCGTCGCAGAAATCGAAACCTCTCTTCACATGTT 1652
||.||.||.||.||||||...||.||.||..|.||.||.|||||||||||
RBAM_028320__ 1600 AAACTCATTCAGGAAATCACGGCTGAGATTAATACATCGCTTCACATGTT 1649
BSNT_04599___ 1653 TAAAGAGGTCAATCAGGAAGTACAGTCCGGACTTGTTGTCACAGACAATA 1702
.|.|...||.|||.|.|||||.||.||||||||||..||.||.|||...|
RBAM_028320__ 1650 CACATCCGTTAATGAAGAAGTTCAATCCGGACTTGCCGTAACGGACCGCA 1699
BSNT_04599___ 1703 CAAAAGAAAGCTTCCAGAGCATTTTCAGCATGACAAACGAAATCGCAGGC 1752
|.||.|||||||||||||..||.|||.|||||||||||||.|||||.|..
RBAM_028320__ 1700 CGAAGGAAAGCTTCCAGAATATCTTCGGCATGACAAACGACATCGCCGAG 1749
BSNT_04599___ 1753 AAGCTGCAAACGATGAATTCCACCGTCGAGCAGCTGTCAGACCGTTCACA 1802
|||||.|||.|||||||...|||.||.||.||||||||||||.|.||.||
RBAM_028320__ 1750 AAGCTTCAATCGATGAACGGCACGGTTGAACAGCTGTCAGACAGCTCTCA 1799
BSNT_04599___ 1803 GCATGTTTCAGCAGCAGTCAGCGGCATTGCAGACGTGTCGAAAGAAAGCT 1852
|||.||||||||.|||||.|.||..|||||.|||||.||.|..||||||.
RBAM_028320__ 1800 GCACGTTTCAGCCGCAGTGACCGATATTGCGGACGTATCTAGGGAAAGCG 1849
BSNT_04599___ 1853 CGGCAAGCATCCAGGACATTGCCGCATCAGCTGAAGAACAGCTTGCTTCC 1902
|.||||||||.|||||.|||||||||||.||.||||||||||||||.||.
RBAM_028320__ 1850 CAGCAAGCATTCAGGATATTGCCGCATCCGCAGAAGAACAGCTTGCATCA 1899
BSNT_04599___ 1903 ATGGAAGAAATCAGTTCCTCAG-CGACCACTCTTGCGCAGATGGCAGAAG 1951
||||||||||||||..|.||.| ||| .|||.|.|||||.|||||.||||
RBAM_028320__ 1900 ATGGAAGAAATCAGCACATCCGCCGA-TACTTTGGCGCAAATGGCCGAAG 1948
BSNT_04599___ 1952 AGCTTCGCGATCTGACGAAACAATTTAAAATCGAGTAA 1989
|.||.||.||..|.||||||||||||||||||.|.||.
RBAM_028320__ 1949 AACTGCGGGAATTAACGAAACAATTTAAAATCAACTAG 1986
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