Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04569 and RBAM_028180

See Amino acid alignment / Visit BSNT_04569 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04569___yuaB.1.9828.seq
#    -bsequence dna-align/RBAM_028180___yuaB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04569___yuaB-RBAM_028180___yuaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04569___yuaB-RBAM_028180___yuaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04569___yuaB
# 2: RBAM_028180___yuaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 565
# Identity:     396/565 (70.1%)
# Similarity:   396/565 (70.1%)
# Gaps:          38/565 ( 6.7%)
# Score: 1316.5
# 
#
#=======================================

BSNT_04569___      1 ------ATGAAACGCAAATTATTATCTTCT---TTGGCAATTAGTGCATT     41
                           |||||||..|||||.||.||..||   .|||||   |||..|||
RBAM_028180__      1 ATGAAAATGAAACAGAAATTTTTCTCAACTGTCATGGCA---AGTTTATT     47

BSNT_04569___     42 AAGTCTCGGGTTACTCGTTTCTGCACCTACAGCTTCTTTCGCGGCTGAAT     91
                     ..|.||.|..||.||..|||||...||.|||||.||.|||||.|||||.|
RBAM_028180__     48 CGGCCTGGTTTTGCTTCTTTCTCTGCCGACAGCGTCATTCGCCGCTGAGT     97

BSNT_04569___     92 CTACATCAAC---TAA--AGCTCATACTGAA---TCTACTATGAGAACAC    133
                     |....|||||   |.|  |||     |.|||   ||.||     |||   
RBAM_028180__     98 CAGGCTCAACCGTTCACGAGC-----CGGAAATGTCCAC-----GAA---    134

BSNT_04569___    134 AGTCTACAGCTTCATTGTTCGCAACAAT-CACTGGCGCCAGCAAAACGGA    182
                     || |.||.|||.|.||.||.|||| ||| .||.||.||||||.|...|||
RBAM_028180__    135 AG-CGACTGCTACCTTATTTGCAA-AATATACAGGTGCCAGCCAGCAGGA    182

BSNT_04569___    183 ATGGTCTTTCTCAGATATCGAATTGACTTACCGTCCAAACACGCTTCTCA    232
                     ||||||.||.||.||||||||||||||.||||||||.||||||.|.||.|
RBAM_028180__    183 ATGGTCATTTTCTGATATCGAATTGACGTACCGTCCGAACACGATCCTGA    232

BSNT_04569___    233 GCCTTGGCGTTATGGAGTTTACATTGCCAAGCGGATTTACTGCAAACACG    282
                     ||.|.|||||||||||.|||||..|.||.|||||||||.|.||.|..||.
RBAM_028180__    233 GCTTAGGCGTTATGGAATTTACCCTTCCTAGCGGATTTGCGGCTACAACA    282

BSNT_04569___    283 AAAGACACACTGAACGGAAATGCCTTGCGTACAACACAGATCCTCAATAA    332
                     |||||.|||.|.||||||.|.||.||||||..||.||||||.||.|||||
RBAM_028180__    283 AAAGATACAGTCAACGGACACGCTTTGCGTGAAAGACAGATTCTGAATAA    332

BSNT_04569___    333 CGGGAAAACAGTAAGAGTTCCTTTGGCAC-TTGATTTGTTAGGAGCTGGC    381
                     |||.||||||||.|||.||||.|| ..|| ||||||||.|.||.||.|..
RBAM_028180__    333 CGGCAAAACAGTCAGACTTCCGTT-AAACATTGATTTGCTCGGCGCAGCG    381

BSNT_04569___    382 GAATTTAAATTAAAACTGAATAACAAAACACTTCCTGCCGCTGGTACATA    431
                     |||||.||..|....||.|||||.||||||.|.|||||.||.||||||||
RBAM_028180__    382 GAATTCAAGCTTTCTCTTAATAATAAAACATTGCCTGCTGCAGGTACATA    431

BSNT_04569___    432 CACTTTCCGTGCAGAGAATAAATCATTAAGCATCGGAAATAAATTTTACG    481
                     .|..|||||||||||.||||||||||||||||||||...||||||.||.|
RBAM_028180__    432 TAAGTTCCGTGCAGAAAATAAATCATTAAGCATCGGCTCTAAATTCTATG    481

BSNT_04569___    482 CAGAAGCCAGCATTGACGTGGCTAAGCGCAGCACTCCTCCGACTCAGCCT    531
                     |.||.|.||..||||..||....||.||||||||.||.|||||.||||||
RBAM_028180__    482 CTGAGGACACAATTGTTGTTCAAAAACGCAGCACACCGCCGACACAGCCT    531

BSNT_04569___    532 TGCGGTTGCAACTAA    546
                     |||...|||||.|||
RBAM_028180__    532 TGCAACTGCAAATAA    546


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