Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04449 and RBAM_027580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:57
# Commandline: needle
# -asequence dna-align/BSNT_04449___pckA.1.9828.seq
# -bsequence dna-align/RBAM_027580___pckA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04449___pckA-RBAM_027580___pckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04449___pckA-RBAM_027580___pckA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04449___pckA
# 2: RBAM_027580___pckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1600
# Identity: 1248/1600 (78.0%)
# Similarity: 1248/1600 (78.0%)
# Gaps: 32/1600 ( 2.0%)
# Score: 4811.0
#
#
#=======================================
BSNT_04449___ 1 ATGAACTCAGTTGATTTGACCGCTGATTTACAAGCCTTATTAACATGTCC 50
|||||.|.|||||||||.|||||.|||.|.|||||.|||.|..||.||||
RBAM_027580__ 1 ATGAAATTAGTTGATTTAACCGCAGATCTTCAAGCATTACTTGCAAGTCC 50
BSNT_04449___ 51 AAATGTGCGTCATAATTTATCTGCAGCACAGCTAACAGAAAAAGTCCTCT 100
.|||||||.||||||||||||.||..||.|.||.||.||||||||..||.
RBAM_027580__ 51 GAATGTGCATCATAATTTATCGGCTCCAAAACTTACCGAAAAAGTGATCA 100
BSNT_04449___ 101 CCCGAAACGAAGGCATTTTAACATCCACAGGTGCTGTTCGCGCGACAACA 150
.||||||.|||||.|...|.|||||.||.||.||.||.|||||.||.||.
RBAM_027580__ 101 GCCGAAATGAAGGAACGCTGACATCAACGGGCGCCGTACGCGCCACCACC 150
BSNT_04449___ 151 GGCGCTTACACAGGACGCTCACCTAAAGATAAATTCATCGTGGAGGAAGA 200
|||||.||.|||||.||.|||||||||||||||||.|||||....|||.|
RBAM_027580__ 151 GGCGCATATACAGGCCGGTCACCTAAAGATAAATTTATCGTCCGTGAACA 200
BSNT_04449___ 201 AAGCACGAAAAATAAGATCGATTGGGGCCCGGTGAATCAGCCCATTTCAG 250
||||||..|||||.|.||.||||||||..|||||||||||||||||||.|
RBAM_027580__ 201 AAGCACAGAAAATCAAATTGATTGGGGTGCGGTGAATCAGCCCATTTCTG 250
BSNT_04449___ 251 AAGAAGCGTTTGAGCGGCTGTATACGAAAGTTGTCAGCTATTTAAAGGAG 300
||||.||||||||...||||||..|.|||||.||||||||.|||||..||
RBAM_027580__ 251 AAGAGGCGTTTGAAAAGCTGTACGCCAAAGTCGTCAGCTACTTAAAACAG 300
BSNT_04449___ 301 CGAGATGAACTGTTTGTTTTCGAAGGATTTGCCGGAGCAGACGAGAAATA 350
||.|||||||||||||||||.||||||||.||.|||||.||.||.|||||
RBAM_027580__ 301 CGGGATGAACTGTTTGTTTTTGAAGGATTCGCGGGAGCGGATGAAAAATA 350
BSNT_04449___ 351 CAGGCTGCCGATCACTGTCGTAAATGAGTTCGCATGGCACAATTTATTTG 400
|||.||.|||||.||.|||||||||||.||.||.||||||||||||||.|
RBAM_027580__ 351 CAGACTCCCGATTACGGTCGTAAATGAATTTGCGTGGCACAATTTATTCG 400
BSNT_04449___ 401 CGCGGCAGCTGTTTATCCGTCCGGA-----AGGAAA-TGATAAGAAAACA 444
||||.||||||||||||.|.||||| |.|||| .||.|.|.||
RBAM_027580__ 401 CGCGCCAGCTGTTTATCAGACCGGAGACGGATGAAAGAGACACGCAA--- 447
BSNT_04449___ 445 GTTGAGCAGCCGTTCACCATTCTTTCTGCTCCGCACTTCAAAGCGGATCC 494
|.||||||.|||||||||||.||.||||||||.||.|||||.|||||
RBAM_027580__ 448 ---GCGCAGCCTTTCACCATTCTCTCAGCTCCGCATTTTAAAGCAGATCC 494
BSNT_04449___ 495 AAAAACAGACGGCACTCATTCCGAAACGTTTATTATTGTCTCTTTCGAAA 544
..|.||.||||||||.|||||.|||||.|||||.||||||||||||||||
RBAM_027580__ 495 GGAGACGGACGGCACGCATTCGGAAACATTTATCATTGTCTCTTTCGAAA 544
BSNT_04449___ 545 AGCG-GACAATTTTAATCGGCGGAACTGAGTATGCCGGTGAAATGAAGAA 593
|||| |.| ||||||||||||||.||.||.||.|||||.||||||||.||
RBAM_027580__ 545 AGCGCGTC-ATTTTAATCGGCGGCACCGAATACGCCGGAGAAATGAAAAA 593
BSNT_04449___ 594 GTCCATTTTCTCCATTATGAATTTCCTGCTGCCTGAA--AGAGATATTTT 641
.||.||.||||||||||||||.||||||||.|| |.| || |||||..|
RBAM_027580__ 594 ATCAATATTCTCCATTATGAACTTCCTGCTTCC-GCAGCAG-GATATACT 641
BSNT_04449___ 642 ATCTATGCACTGCTCCGCCAATGTCGGTGAAAAAGGCGATGTCGCCCTTT 691
..|.|||||||||||.||||||||||||||||||||||||||||||||.|
RBAM_027580__ 642 GCCGATGCACTGCTCAGCCAATGTCGGTGAAAAAGGCGATGTCGCCCTGT 691
BSNT_04449___ 692 TCTTCGGACTGTCAGGAACAGGAAAGACCACCCTGTCGGCAGATGCTGAC 741
|.|||||.||.||.||.|||||.||.||.||.||.||.||.|||||.|||
RBAM_027580__ 692 TTTTCGGCCTTTCCGGCACAGGGAAAACGACGCTTTCAGCCGATGCGGAC 741
BSNT_04449___ 742 CGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGATACAGGCGTCTT 791
|||||.||||||||.||.||.||.||.||||||||.|||.|.|||||.||
RBAM_027580__ 742 CGCAAACTGATCGGCGATGACGAGCACGGCTGGTCAGATTCCGGCGTTTT 791
BSNT_04449___ 792 TAATATTGAAGGCGGGTGCTACGCTAAGTGCATTCATTTAAGCGAGGAAA 841
.||.|||||||||||.||.||||||||.||.||..||.|.||||||||||
RBAM_027580__ 792 CAACATTGAAGGCGGATGTTACGCTAAATGTATCAATCTGAGCGAGGAAA 841
BSNT_04449___ 842 AGGAGCCGCAAATCTTTAACGCGATCCGCTTCGGGTCTGTTCTCGAAAAT 891
|.||.|||||.||.|||...|||||||||||||||||||||||.||.|||
RBAM_027580__ 842 AAGAACCGCAGATTTTTCGTGCGATCCGCTTCGGGTCTGTTCTTGAGAAT 891
BSNT_04449___ 892 GTCGTTGTGGATGAAGATACACGCGAAGCCAATTATGATGATTCCTTCTA 941
|||||..|.||||||.|.||..|.|||||..||||.||..||||||||||
RBAM_027580__ 892 GTCGTGCTTGATGAAAAAACGGGTGAAGCGGATTACGACAATTCCTTCTA 941
BSNT_04449___ 942 TACTGAAAACACGCGGGCAGCTTACCCGATTCATATGATTGACAACATCG 991
.||.||||||||..|.||.||.||.||||||.|.|||||.|.|||.||||
RBAM_027580__ 942 CACGGAAAACACAAGAGCCGCATATCCGATTGAGATGATCGGCAATATCG 991
BSNT_04449___ 992 TGACTCCAAGCATGGCCGGCCATCCGTCA-GCAATTGTATTTTTGACGGC 1040
||...||.|||||.|||||||||||| || ||.||.||.|||||.|||||
RBAM_027580__ 992 TGCAGCCGAGCATTGCCGGCCATCCG-CAGGCGATCGTCTTTTTAACGGC 1040
BSNT_04449___ 1041 TGATGCCTTCGGAGTCCTGCCGCCGATCAGCAAACTAACGAAGGAGCAGG 1090
.||.||||||||.||.||.||.||||||||||||||.||||||||.||||
RBAM_027580__ 1041 GGACGCCTTCGGTGTGCTCCCTCCGATCAGCAAACTGACGAAGGAACAGG 1090
BSNT_04449___ 1091 CCATGTACCATTTCTTGAGCGGTTACACGAGTAAGCTCGCCGGAACCGAA 1140
|.|||||.||.|||||.|||||.|||||.|||||.|||||.||||||||.
RBAM_027580__ 1091 CGATGTATCACTTCTTAAGCGGGTACACCAGTAAACTCGCGGGAACCGAG 1140
BSNT_04449___ 1141 CGTGGTGTCACGTCTCCTGAAACGACGTTCTCTACATGCTTCGGCTCACC 1190
||.||.||.||.|||||..|||||||.|||||.||.||||||||.|||||
RBAM_027580__ 1141 CGCGGCGTGACATCTCCGCAAACGACTTTCTCCACGTGCTTCGGTTCACC 1190
BSNT_04449___ 1191 GTTCCTGCCGCTTCCTGCTCACGTCTATGCTGAAATGCTC-GGCAAAAAG 1239
||||||.||||||||.||.||.||.|||||.||||||||| ||||.|||
RBAM_027580__ 1191 GTTCCTTCCGCTTCCGGCGCATGTATATGCCGAAATGCTCGGGCATAAA- 1239
BSNT_04449___ 1240 ATCGATGAACACGGGGCAGACGTTTTCTTAGTCAATACCGGCTGGACCGG 1289
|||||.||||||||.|...|.||.|||.|.|||||.||.|||||||||||
RBAM_027580__ 1240 ATCGACGAACACGGCGTTCAAGTCTTCCTGGTCAACACAGGCTGGACCGG 1289
BSNT_04449___ 1290 GGGCGGCTACGGCACAGGCGAACGAATGAAGCTTTCTTACACTAGAGCAA 1339
.||.||.|||||....||.|||||.|||||.|||||.||.||.|||||.|
RBAM_027580__ 1290 CGGAGGGTACGGAGTCGGAGAACGGATGAAACTTTCGTATACAAGAGCGA 1339
BSNT_04449___ 1340 TGGTCAAAGCAGCGATTGAAGG-----TAAATTAGAGGATGCTGAAATGA 1384
|||||||.||.||.|||||||| |.||..||| ||||.||||
RBAM_027580__ 1340 TGGTCAAGGCCGCTATTGAAGGCAGACTGAACCAGA-----CTGACATGA 1384
BSNT_04449___ 1385 TAACTGACGATATTTTCGGCCTGCACATTCCGGCCCATGTTCCTGGCGTT 1434
...|.|||...|||||||||||||.||.|||.|..||||||||.||||||
RBAM_027580__ 1385 CGGCAGACAGCATTTTCGGCCTGCGCAGTCCCGTTCATGTTCCGGGCGTT 1434
BSNT_04449___ 1435 CCTGATCATATCCTTCAGCCTGAAAACACGTGGACCAACAAGGAAGAATA 1484
||.|||.|..|.|||||||||||||||||.||||.|.|.||..|||.|||
RBAM_027580__ 1435 CCGGATGAAGTTCTTCAGCCTGAAAACACATGGAGCGATAAACAAGCATA 1484
BSNT_04449___ 1485 CAAAGAAAAGGCAGTCTACCTTGCAAATGAATTCAAAGAGAACTTTAAAA 1534
|||.|||||.||..|.|...|.||.|||||.||.|||||.||||||||||
RBAM_027580__ 1485 CAACGAAAAAGCGCTGTTTTTAGCCAATGAGTTTAAAGAAAACTTTAAAA 1534
BSNT_04449___ 1535 AGTTCGCACATACCGATGCCATCGCCCAGGCAGGCGGCCCTCTCGTATAA 1584
||||..|.|||.|.||..|.||.|||.|.||.|||||.||||||||.|||
RBAM_027580__ 1535 AGTTTTCCCATGCGGACTCGATTGCCAAAGCCGGCGGACCTCTCGTGTAA 1584
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