Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04378 and RBAM_027150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04378.1.9828.seq
# -bsequence dna-align/RBAM_027150___ytfP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04378-RBAM_027150___ytfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04378-RBAM_027150___ytfP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04378
# 2: RBAM_027150___ytfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1304
# Identity: 955/1304 (73.2%)
# Similarity: 955/1304 (73.2%)
# Gaps: 70/1304 ( 5.4%)
# Score: 3501.5
#
#
#=======================================
BSNT_04378 1 ATGAAAAGAAAGTTGATGATAAAGATGAAACAATATGACGTAATTGTAAT 50
||.|||||.||
RBAM_027150__ 1 ---------------------------------------GTGATTGTGAT 11
BSNT_04378 51 CGGCGGAGGCCCTTCAGGCTTGATGGCTGCGATTGCAGCAGGAGAACAGG 100
||||||.|||||.||.||.||.||||||||||||||.|||||.|||.|.|
RBAM_027150__ 12 CGGCGGCGGCCCGTCCGGTTTAATGGCTGCGATTGCGGCAGGCGAAGAAG 61
BSNT_04378 101 GCGCTGGCGTGTTGCTGATAGATAAAGGAAATAAATTAGGACGGAAACTC 150
|.||.|..||.||..|.||.|||||||||||.||..|.||||||||.||.
RBAM_027150__ 62 GGGCGGATGTATTATTAATCGATAAAGGAAACAAGCTGGGACGGAAGCTG 111
BSNT_04378 151 GCGATTTCCGGGGGCGGCCGCTGTAATGTGACGAACCGCCTTCCTGTGGA 200
|||||||||||.|||||.|||||.||.|||||.||||||||.||.||.||
RBAM_027150__ 112 GCGATTTCCGGCGGCGGGCGCTGCAACGTGACCAACCGCCTCCCCGTTGA 161
BSNT_04378 201 AGAAATTATCAAGCACATCCCCGGCAACGGGCGTTTTTTATACAGCGCGT 250
||||||.|||||.|||||||||||||||||.||.||||||||||||||||
RBAM_027150__ 162 AGAAATCATCAAACACATCCCCGGCAACGGCCGCTTTTTATACAGCGCGT 211
BSNT_04378 251 TTTCTGAATTTAATAATGAAGACATTATCAAGTTTTTTGAAAACCTCGGC 300
||||.|||||||||||||||||.||.|||...|||||||||||.||||||
RBAM_027150__ 212 TTTCCGAATTTAATAATGAAGATATCATCGCCTTTTTTGAAAAACTCGGC 261
BSNT_04378 301 ATTCAATTGAAGGAAGAGGATCACGGCCGGATGTTTCCTGTGACCGACAA 350
|||||..||||.|||||.||.|||||.||.|||||.||.|||||.|||||
RBAM_027150__ 262 ATTCAGCTGAAAGAAGAAGACCACGGGCGCATGTTCCCGGTGACGGACAA 311
BSNT_04378 351 AGCCCAAAGTGTCGTTGACGCGCTGTTAAACAGGCTGAAGCAGCTCCGCG 400
|||.|||||.||.||.||.|||||.||.|||.|..|.||.||.||....|
RBAM_027150__ 312 AGCGCAAAGCGTTGTCGATGCGCTTTTGAACCGATTAAAACAACTGAATG 361
BSNT_04378 401 TAACAATCAGAACGAACGAGAAAATTAAATCTGTTATATATGAAGATGGA 450
|.||.|||.|.||.||.||.|||||.|||...||....||.| |||..|.
RBAM_027150__ 362 TCACCATCCGCACAAATGAAAAAATCAAAGAAGTGCGGTACG-AGAACGG 410
BSNT_04378 451 CAGG-CAGCAGGGATTGTGACGAATAATGGCGAAATGATCCATAGC-CAG 498
|||| ||||.||.|||..|||.||.||||.||||...|| ||.| |||
RBAM_027150__ 411 CAGGACAGCGGGCATTACGACAAACAATGACGAACACAT---TAACGCAG 457
BSNT_04378 499 --GCAGTCATTATCGCTGTCGGCGGTAAAAGC-GTGCCTCATACCGGAAG 545
||.||.||||||||.|||||||| ||||.| ||.||.||||||||.||
RBAM_027150__ 458 ACGCCGTTATTATCGCGGTCGGCGG-AAAATCAGTCCCGCATACCGGCAG 506
BSNT_04378 546 CACGGGAGACGGCTATGAATGGGCTGAAGCCGCGGGACATACCATAACAG 595
|||.|||||||||||||.||||||.|||||.||.||.||||||.|.||.|
RBAM_027150__ 507 CACCGGAGACGGCTATGCATGGGCGGAAGCGGCCGGTCATACCGTGACCG 556
BSNT_04378 596 AGCTGTTTCCGACAGAGGTTCCCGTCACTTCTAGCGAACCGTTCATTAAG 645
|.||.||||||||.||.||.||.||.||.||....||||||||.|||||.
RBAM_027150__ 557 AACTCTTTCCGACGGAAGTGCCGGTTACGTCGTCAGAACCGTTTATTAAA 606
BSNT_04378 646 CAAAAAACACTTCAGGGCTTATCACTAAGAGATGTAGCCGTCAGTGTGTT 695
|||||||||||||||||..|.||.||.|||.|.|..||||||||.||..|
RBAM_027150__ 607 CAAAAAACACTTCAGGGGCTGTCTCTTAGAAACGCGGCCGTCAGCGTCCT 656
BSNT_04378 696 AAATAAAAAAGGCAAACCGATTATCACACATAAAATGGACATGCTGTTTA 745
.|||||||||||||||||.||..|||||||....||||||||||||||.|
RBAM_027150__ 657 GAATAAAAAAGGCAAACCAATCGTCACACACGTGATGGACATGCTGTTCA 706
BSNT_04378 746 CCCATTTCGGCCTCTCAGGACCTGCCATTCTCAGATGCAGCCAATTTGTC 795
|||||||||||.|.|||||.||.|||||||||.|.||||||||.||||||
RBAM_027150__ 707 CCCATTTCGGCTTGTCAGGCCCCGCCATTCTCCGCTGCAGCCAGTTTGTC 756
BSNT_04378 796 GTAAAAGAGCTGAAAAAACAGCC-----TCAAGTACCGATCAGAATCGAC 840
||.|||||.||||||||.||||| |||| || ||.|.|||||.
RBAM_027150__ 757 GTCAAAGAACTGAAAAAGCAGCCAGAGGTCAA--AC---TCCGCATCGAT 801
BSNT_04378 841 TTGTATCCGGATATCAATGAAGAAACGCTTTTCCAAAAGATGTATAAAGA 890
.|||.|||.|..|||||.||.|||..|.|.||.|||||||||.|.||.||
RBAM_027150__ 802 CTGTTTCCCGGCATCAACGAGGAAGAGTTATTTCAAAAGATGCACAAGGA 851
BSNT_04378 891 ACTGAAGGAAGCACCGAAAAAAACCATTAAAAACGTGCTGAAGCCTTGGA 940
||||||.||.||||||||||||.|..|.|||||||.|||||||||.||||
RBAM_027150__ 852 ACTGAAAGACGCACCGAAAAAAGCGCTCAAAAACGCGCTGAAGCCGTGGA 901
BSNT_04378 941 TGCAGGAGCGCTATCTCCTATTCCTGCTCGAAAAAAACGGCATCT--CTC 988
|||||||.||.||.||.||.||.||.||.|||...||||| ||| .||
RBAM_027150__ 902 TGCAGGAACGGTACCTGCTTTTTCTTCTGGAACGGAACGG--TCTTGATC 949
BSNT_04378 989 CGAACGTATCGTTTTCTGAGCTGCCGAAGGATCCTTTCAGACAATTTGTA 1038
||.|...|...|||.|.||.|||||||||||||..|||||....||||..
RBAM_027150__ 950 CGCAGACAAGCTTTACGGAACTGCCGAAGGATCAATTCAGGGCTTTTGCC 999
BSNT_04378 1039 AGGGACTGCAAGCAGTTTACTGTCCTCGCAAATGGCACACTGTCGCTTGA 1088
|..||||||||.||.|||||.||...|||..|.||.||.||.||..|.||
RBAM_027150__ 1000 AAAGACTGCAAACAATTTACGGTTGCCGCTGACGGAACGCTTTCTTTGGA 1049
BSNT_04378 1089 TAAGGCATTTGTCACGGGAGGCGGGGTATCTGTAAAAGAAATTGACCCGA 1138
.||.||.||||||||.||.||.||.||.||.||||||||.|||||.||||
RBAM_027150__ 1050 CAAAGCGTTTGTCACAGGCGGAGGTGTTTCCGTAAAAGAGATTGAGCCGA 1099
BSNT_04378 1139 AAAAAATGGCTTCTAAAAAAATGGAGGGGCTT-TATTTTTGCGGTGAAAT 1187
||.|||||||.||.||||||||||| .||||| |||||||||||.|||||
RBAM_027150__ 1100 AACAAATGGCGTCAAAAAAAATGGA-AGGCTTATATTTTTGCGGAGAAAT 1148
BSNT_04378 1188 CCTGGATATCCACGGCTACACAGGCGGATACAATATTACCTCCGCCCTTG 1237
.||.||.||.||||||||.||.||.||.||||||||.||.||.||..|||
RBAM_027150__ 1149 ACTCGACATTCACGGCTATACCGGGGGCTACAATATCACTTCAGCTTTTG 1198
BSNT_04378 1238 TCACAGGCAGGCTTGCAGGGCTAAATGCCGGACAAT----ACGCCCGTTC 1283
|||||||..|.||.||.||..|.|||||.||||..| ||||.||.||
RBAM_027150__ 1199 TCACAGGGCGTCTCGCCGGTTTGAATGCAGGACGTTTCTCACGCTCGCTC 1248
BSNT_04378 1284 TTAA 1287
|.|
RBAM_027150__ 1249 TAA- 1251
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