Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04291 and RBAM_026400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_04291___ackA.1.9828.seq
# -bsequence dna-align/RBAM_026400___ackA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04291___ackA-RBAM_026400___ackA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04291___ackA-RBAM_026400___ackA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04291___ackA
# 2: RBAM_026400___ackA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1296
# Identity: 1009/1296 (77.9%)
# Similarity: 1009/1296 (77.9%)
# Gaps: 108/1296 ( 8.3%)
# Score: 4329.0
#
#
#=======================================
BSNT_04291___ 1 ATGTTTAAATGGAAAAGTCAGATATTTTTCGGAGAAGATGTTGATATTCA 50
RBAM_026400__ 0 -------------------------------------------------- 0
BSNT_04291___ 51 CCGGGAAAAAAGTACGAAAAACGAAGTTGTTGATACAGAGTATAAAGGAG 100
RBAM_026400__ 0 -------------------------------------------------- 0
BSNT_04291___ 101 CGTCAATCATGTCCAAAATTATTGCAATTAACGCAGGAAGCTCGTCTTTG 150
|||||.|||||||||||||||||||||||||||||.|||||.
RBAM_026400__ 1 --------ATGTCTAAAATTATTGCAATTAACGCAGGAAGCTCATCTTTA 42
BSNT_04291___ 151 AAATTTCAGCTTTTCGAAATGCCTTCAGAAACCGTTTTAACGAAGGGTTT 200
|||||||||.|.|||||||||||||||||||..||..||||.||.|||||
RBAM_026400__ 43 AAATTTCAGTTATTCGAAATGCCTTCAGAAAAGGTGCTAACAAAAGGTTT 92
BSNT_04291___ 201 AGTTGAACGAATCGGTATCGCCGACAGCGTATTCACAATTTCTGTGAACG 250
|||.|||||.||||||||||||||||||||.||||||||.|||||.||||
RBAM_026400__ 93 AGTAGAACGGATCGGTATCGCCGACAGCGTTTTCACAATCTCTGTTAACG 142
BSNT_04291___ 251 GCGAAAAAAATACAGAAGTAACTGATATTCCGGATCATGCGGTAGCTGTT 300
|||||||||||||||||||.||.||||||||||||||||||||.||.||.
RBAM_026400__ 143 GCGAAAAAAATACAGAAGTGACAGATATTCCGGATCATGCGGTTGCGGTG 192
BSNT_04291___ 301 AAAATGCTGCTGAATAAGTTAACGGAATTCGGCATTATTAAAGACTTGAA 350
||.||||||||..|.|||.|.||.||||||||.|||||.||.||..|.||
RBAM_026400__ 193 AAGATGCTGCTTCACAAGCTGACTGAATTCGGTATTATAAAGGATCTAAA 242
BSNT_04291___ 351 TGAAATTGACGGAATTGGCCATCGTGTCGTTCACGGCGGAGAAAAATTCA 400
|||||||||||||||.|||||.|||||.||||||||||||||||||||||
RBAM_026400__ 243 TGAAATTGACGGAATCGGCCACCGTGTGGTTCACGGCGGAGAAAAATTCA 292
BSNT_04291___ 401 GCGATTCTGTTTTATTAACGGATGAAACCATTAAGGAAATCGAAGATATT 450
|||||||||||||..|.|||||||||||.||....||.||.|||||.|||
RBAM_026400__ 293 GCGATTCTGTTTTGCTTACGGATGAAACAATCCGTGAGATTGAAGAGATT 342
BSNT_04291___ 451 TCTGAATTGGCACCGCTTCACAATCCGGCAAATATCGTTGGAATTAAAGC 500
||.|||.|.||.|||||||||||.|||||.||.|||||.||.||||||||
RBAM_026400__ 343 TCAGAACTAGCGCCGCTTCACAACCCGGCTAACATCGTCGGCATTAAAGC 392
BSNT_04291___ 501 GTTCAAAGAAGTGCTTCCAAATGTTCCTGCGGTAGCTGTATTTGATACGG 550
.||.||||||||||||||.|||||.||||||||.||.||.||||||||||
RBAM_026400__ 393 CTTTAAAGAAGTGCTTCCGAATGTGCCTGCGGTTGCAGTGTTTGATACGG 442
BSNT_04291___ 551 CATTCCACCAAACAATGCCTGAGCAGTCTTACCTGTACAGCCTGCCGTAT 600
|.|||||||||||.||||||||.||.|||||||||||||||||.|||||.
RBAM_026400__ 443 CGTTCCACCAAACGATGCCTGAACAATCTTACCTGTACAGCCTACCGTAC 492
BSNT_04291___ 601 GAATACTATGAAAAATTCGGCATCCGTAAATACGGCTTCCACGGCACTTC 650
||||||||.||.||||.||||||.||.||||||||.|||||||||||.||
RBAM_026400__ 493 GAATACTACGAGAAATACGGCATTCGCAAATACGGTTTCCACGGCACATC 542
BSNT_04291___ 651 ACATAAATATGTAACTGAGCGTGCGGCAGAGCTTCTCGGCCGTCCGTTAA 700
.||||||||.||.||..||||.||.||.||||||||||||||.|||.|..
RBAM_026400__ 543 TCATAAATACGTGACACAGCGCGCAGCTGAGCTTCTCGGCCGCCCGCTTG 592
BSNT_04291___ 701 AAGACTTGCGCCTGATTTCCTGCCACCTTGGAAACGGAGCAAGTATTGCC 750
||||.|||||.|||||||||||||||||.||.|||||.||||||||.||.
RBAM_026400__ 593 AAGATTTGCGTCTGATTTCCTGCCACCTCGGTAACGGCGCAAGTATCGCG 642
BSNT_04291___ 751 GCTGTTGAAGGCGGAAAATCTATTGACACATCCATGGGCTTTACGCCGCT 800
||.||.||||||||||||||.|||||.||.||.||||||||.||.|||||
RBAM_026400__ 643 GCGGTAGAAGGCGGAAAATCCATTGATACGTCAATGGGCTTCACACCGCT 692
BSNT_04291___ 801 TGCCGGTGTAGCAATGGGCACACGCTCTGGAAACATCGACCCTGCCCTGA 850
|||.|||||.||.|||||.|||||.||.|||||||||||||||||..|||
RBAM_026400__ 693 TGCGGGTGTTGCGATGGGAACACGTTCAGGAAACATCGACCCTGCATTGA 742
BSNT_04291___ 851 TCCCATACATCATGGAGAAAACAGGCCAAACGGCTGACGAAGTACTGAAT 900
|.||.|||||.|||||.|||||.|..||.|||||.||.||||||.|.|||
RBAM_026400__ 743 TTCCGTACATTATGGAAAAAACGGATCAGACGGCAGATGAAGTATTAAAT 792
BSNT_04291___ 901 ACATTAAACAAAAAAAGCGGACTGCTCGGCATTTCCGGTTTCTCAAGCGA 950
||.|||||.|||||.|||||||||||.|||.|.|||||||||||.|||||
RBAM_026400__ 793 ACGTTAAATAAAAAGAGCGGACTGCTTGGCGTATCCGGTTTCTCCAGCGA 842
BSNT_04291___ 951 TCTTCGTGACATCGTTGAAGCAACGAAAGAAGGAAATGAGCGCGCGGAAA 1000
.|||||.||.|||||.|||||..|.|||||||||||.||..|.|||||||
RBAM_026400__ 843 CCTTCGCGATATCGTAGAAGCTTCAAAAGAAGGAAACGAAAGAGCGGAAA 892
BSNT_04291___ 1001 CGGCTCTTGAAGTATTCGCAAGCAGAATCCACAAATACATCGGTTCTTAC 1050
|||||||||||||.||.||||||||||||||.||||||||||||||||||
RBAM_026400__ 893 CGGCTCTTGAAGTGTTTGCAAGCAGAATCCATAAATACATCGGTTCTTAC 942
BSNT_04291___ 1051 GCTGCAAGAATGAGCGGTGTCGATGCGATCATCTTTACTGCCGGTATCGG 1100
|||||.|||||||||||.||.||.|||||.||.||.|||||.||||||||
RBAM_026400__ 943 GCTGCGAGAATGAGCGGCGTTGACGCGATTATTTTCACTGCGGGTATCGG 992
BSNT_04291___ 1101 TGAAAACAGTGTGGAAGTCAGAGAACGCGTTCTGCGCGGTTTAGAATTCA 1150
|||||||||.||.|||||||||||||||||.||.|||||.||||||||||
RBAM_026400__ 993 TGAAAACAGCGTTGAAGTCAGAGAACGCGTGCTTCGCGGCTTAGAATTCA 1042
BSNT_04291___ 1151 TGGGCGTATACTGGGATCCTGCGCTTAATAACGTGCGCGGCGAGGAAGCT 1200
||||.|||||.||||||||||||||.||.||||||||||||||||||||.
RBAM_026400__ 1043 TGGGTGTATATTGGGATCCTGCGCTGAACAACGTGCGCGGCGAGGAAGCG 1092
BSNT_04291___ 1201 TTCATCAGCTATCCGCATTCTCCAGTAAAAGTCATGATCATTCCGACTGA 1250
||.||||||||.||.||.|||||.||.|||||||||||||||||||||||
RBAM_026400__ 1093 TTTATCAGCTACCCTCACTCTCCTGTCAAAGTCATGATCATTCCGACTGA 1142
BSNT_04291___ 1251 TGAAGAAGTCATGATTGCGCGCGACGTTGTTCGTTTAGCAAAATAA 1296
.|||||.||||||||.||.|||||||||||.||..|.|||.|.|||
RBAM_026400__ 1143 CGAAGAGGTCATGATCGCACGCGACGTTGTCCGCCTTGCACAGTAA 1188
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